| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_0172 |
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| Symbol | |
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| ID | 6280816 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 184673 |
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| End bp | 186457 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642619746 |
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| Product | TRAG family protein |
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| Protein accession | YP_001893835 |
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| Protein GI | 187922193 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.218422 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCACGA TGGCGAACCC CGGCGTCTAC GACAGCGGGC CGCCGCTGGT CGTGGGCGTG
TGGCACGGCC GCTATCTGCG GTTTGCCGGC CAGCAGTTCG TGCTGCTCGC AGCGCCTGCG
CGCTCAGGCA AGGGCGTGGG TATCGTGGTG CCCAACCTGC TGAGCTACCC CGATTCGGTG
GTGGTGCTCG ACATCAAGCA GGAGAATTTC CACCTCACCG CGGGCTTCCG TCGGGCGCAC
GGGCACGACG TGTACCTGTT CAACCCGTTT GCGGAGGATG GCCGTACGCA CCGGTACAAC
CCGCTGTCGG CCATATCGGG TGGCGTTTTC CGCGTCGGTG ACATTCTCGC GATCGGCTAC
GCGCTGTACC CGGTCGGTGG TCACGACGAC TTCTGGAAAG ACCAGGCGCG CAACCTTTTC
CTCGGCATCG TGCTGCTGCT GTGCGAATGG CGCGATGCGC GCCGCGCGGG CAATACCGAT
GCGCCCGACT GTCCGGTGAC GATGGGCGAG GTGCTGCGCC AGTCGTCGGG CAACGGCATG
CCAGTCAAGG CGTATCTCCA GCAGGCATTG CTGCAGAACC GGCGGCGGCT CAGCGGTGCG
TGCATCGACG CGCTGAACCG CTTCCTCGCG AACGACGACA AGGTGCTCGC GAGCATCCTC
GCGACCTTCA ATGCACCGCT CACGATCTTC GCCAATCCGA TTGTCGATGC GGCCACAAGC
GCCAATGACT TCGACCTGCG TGACGTGCGC AGGCGCCGCA TGTCGGTCTA TGTCGGCATC
ACACCGGACC ACCTGACCGA GGCGGCACTT CTCGTCAACC TCCTGTTCTC ACAGCTGGTC
AATCTGAACA CCAAGGAACT GCCGCAGGAC AACCCGGCGC TGAAGATTCA GTGCCTGCTG
CTGATGGACG AGTTCACCTC GGTCGGCAAG ATCCACATCA TTGCCCGCGC GGTCGCCTAC
ATGGCGGGCT ATAACCTGCG GCTGCTCTCG ATCGTGCAGT CGGTCTCGCA GCTCGAGTCG
GTGTATGGCC GGGCGGACGC GAGAACGTTC GTCACGAATC ACGCGATGCA GATCATCTAT
GCACCGCGCG AGCAGAAGGA CGCGAACGAA TACTCGGAGA TGCTCGGCAC CTTTACGGAC
CGCTCGCGTA GCGTGAGCCG GTCGAACGCG ATCTTCGGCG GACGCGGTGG GTCGAGCGAG
AGTTTTTCGG AACAGCGCCG GCCGCTGCTG TTGCCGCAGG AGCTGAAAGA GCTCGGGCGC
GAGAAGGAAA TCATCCTGCT CGAAAACACC AAACCCATCC TGGCGGAACG CATCTGCTAC
TGGCGTGATC CGGTTTTCAC GTCACGCCTT GCGGCCGCCC CGGCAATTCC CGCGATGGAC
CTCGTGCGCT TCACCGCCCA GGTCGAGCGG CGGTTAAGGG ATCTGCAACC CGATGACATG
GATGAAGCCG GCGTCCTGCA CGTATCCCCG GAATATCTGG AAGTGCTGCA GACATGGGAT
CCGCGCGAGC TGCCGCGGCA TCTGAACGAC ATCAGCGATG AAGAGGCAGC CGCGTACGTC
GAGCGGCATT TCATCCTGTT GGGCGTACCG GCCAAAGGGG TCGCGGTAGC GGCACGCCGA
CTGTCGCCAT CCGATCTCGA TGTCGCGGAA CTGCGCCCCG CGGATGGCGT CCCCAAAGCG
CATGCCGCGC GCGGTACAGG CGCCTCGCGG AAACGCCAGG GGCGCACCCC GTCGCGCACC
GCTGAGGGTT CGAACGTCGT GCCGCTTCAT GGAGACCGCC GATGA
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| Protein sequence | MSTMANPGVY DSGPPLVVGV WHGRYLRFAG QQFVLLAAPA RSGKGVGIVV PNLLSYPDSV
VVLDIKQENF HLTAGFRRAH GHDVYLFNPF AEDGRTHRYN PLSAISGGVF RVGDILAIGY
ALYPVGGHDD FWKDQARNLF LGIVLLLCEW RDARRAGNTD APDCPVTMGE VLRQSSGNGM
PVKAYLQQAL LQNRRRLSGA CIDALNRFLA NDDKVLASIL ATFNAPLTIF ANPIVDAATS
ANDFDLRDVR RRRMSVYVGI TPDHLTEAAL LVNLLFSQLV NLNTKELPQD NPALKIQCLL
LMDEFTSVGK IHIIARAVAY MAGYNLRLLS IVQSVSQLES VYGRADARTF VTNHAMQIIY
APREQKDANE YSEMLGTFTD RSRSVSRSNA IFGGRGGSSE SFSEQRRPLL LPQELKELGR
EKEIILLENT KPILAERICY WRDPVFTSRL AAAPAIPAMD LVRFTAQVER RLRDLQPDDM
DEAGVLHVSP EYLEVLQTWD PRELPRHLND ISDEEAAAYV ERHFILLGVP AKGVAVAARR
LSPSDLDVAE LRPADGVPKA HAARGTGASR KRQGRTPSRT AEGSNVVPLH GDRR
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