Gene Bphyt_0168 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_0168 
Symbol 
ID6280812 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp181087 
End bp181932 
Gene Length846 bp 
Protein Length281 aa 
Translation table11 
GC content64% 
IMG OID642619742 
ProductConjugal transfer protein TrbG/VirB9/CagX 
Protein accessionYP_001893831 
Protein GI187922189 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3504] Type IV secretory pathway, VirB9 components 
TIGRFAM ID[TIGR02781] P-type conjugative transfer protein VirB9 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.313192 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAACGA ACACATTGAT GAGAGCCACC GCGCTGGCGA CAGCGCTGGC AGTGTTATGT 
GTTGGCTCGT CCGGGGCGCA CGCCTACGAC GTGCCGGGCT GGTCGGGCGA CTCGCGCGTG
CGGCAGGTCG TGTACCGGCA GGACGAGGTG GTGCGGGTTA TCGCGCAGCG CGGCTTCGCC
ACGCACATCG CGCTCGATCC GGCCGAACAC ATTCTCGTCG TGGCCCCGGG CGACCGGGAT
GGCTGGCAGG TGGTCGCGAA CCGTGGTGAC CATGATGTCT ATCTCAAGCC GCAGCTTGCC
GCGCACGACA CGAACCTGGA AATCCGCACC GACCGGCACA GTTACAGCTT CGATCTGGTC
GTGCTGCCAC TCAGGGCCCG TTTCGGTAAC GACGATGAGA TGTACCGCAT CACGTTCGTT
TATCCGGACG TGGAGGCCGC GAAGACAAAG ACCACTGACG CCGCTGCCCT CGTGCGCGAG
CGTCTTGACC AGCCGCCGCG GGTGCGCAAT AGCGCGTACT CGATGCAGGT CATGCCGCAT
TCGGAGGACA TCGCGCCGAC AGCGGCCTGG GACGACGGGC GCTTTACCTA CATCCGCATT
CCCAACAACC GCCGTATTCC CGCGATCTTC CGGGTGGCCG ACGACGACAG CGAAAGTGTT
GTCGACAGGC ACATGGAAGA CGACGTGATC GTCGTGCACG AAGTAGCCCG GCGTTTCGTA
CTGCGTCTGG GAAAAGAGGT GGTGGGTCTG TGGAACGACG CGTTCGATGT GGACGGCGTG
CCACCTGCCG ATGGCACGAC CGTGAGCGGT GTGAAGCGTG TCCTGCGGAG CGATGGCCAT
GAATGA
 
Protein sequence
MRTNTLMRAT ALATALAVLC VGSSGAHAYD VPGWSGDSRV RQVVYRQDEV VRVIAQRGFA 
THIALDPAEH ILVVAPGDRD GWQVVANRGD HDVYLKPQLA AHDTNLEIRT DRHSYSFDLV
VLPLRARFGN DDEMYRITFV YPDVEAAKTK TTDAAALVRE RLDQPPRVRN SAYSMQVMPH
SEDIAPTAAW DDGRFTYIRI PNNRRIPAIF RVADDDSESV VDRHMEDDVI VVHEVARRFV
LRLGKEVVGL WNDAFDVDGV PPADGTTVSG VKRVLRSDGH E