| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_7347 |
|---|
| Symbol | |
|---|
| ID | 6280682 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010679 |
|---|
| Strand | + |
|---|
| Start bp | 74136 |
|---|
| End bp | 76685 |
|---|
| Gene Length | 2550 bp |
|---|
| Protein Length | 849 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642619526 |
|---|
| Product | CagE TrbE VirB component of type IV transporter system |
|---|
| Protein accession | YP_001893561 |
|---|
| Protein GI | 187921972 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
|---|
| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.327754 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGTCT ACGATGAACT GATTGCGAAA GAGGAACCTG CTACCAAGTA CATTCCGTAC
AGTAAGCAGA TCACTCCCAC GACTTGCACG ACAGTCGAGC GGGACTTGAC TCGTACCATC
CGTTGCGATG GCGTTCCGTT CGAGACCATG AGCGATGAAG AACTCAACGG GTTCACTCGC
TCGTGGTTCG CTGCGATCAA CACGCTTGGG GCGAATAACA ACCGCGTTGC GCTCTGGTCG
CATGTGGTCC GTAGCAAATT GCGCTACGAC CTTTCCGGCA TCAAGTACGA CAACTACTTT
TCCCAACTGT TCGGCGATCA GATTGCCGAA CGTGTCGGAA AGAAGACGTT TTTCCAGAAC
GAGCTGTTTC TGTCTCCCGT CTATAGGCCC GCGCCTGGAC GCGCGGAGCG CATTGGTGCT
GCGCTTGACA AGCAGGGCGG GAGCGACGTG CTTGCTGCGG CCCGAGACGA AATCGACCGC
ATTACCAACC AGCTCGTCCG CAGCCTGCGG CGCTACAACC CGTCCGTTCT CGGCGTTGAG
GAATTCGACG GCGAGAAGCC CGCTATTTCG CATCTTCAGG CGTTCTACGG CCGCCTGCTC
AATGCGGACG TTGGCCCTGT CCCGCTCGAC AGCTATTCCG TTCGTTTTGC CATTCAGCGC
AACGAACTGC ATTTTGGCCG GGAAATTATC GAAATCGAGG GGCCGGTTTC ATCGCGCTAT
GCCGGCGTAG TTGGTCTGAA GGCACCCTAC GGCGCGGAGA ATGCCAAGGT CAATATCTTT
CACGGCCTGC TGCGTTTGCC GTATGAATTT GTCTTGAGCC AGTCGCTGAC CTTTCTGCCG
CTCAACAAGG CCGACAAGTT CCTTCAAACA CAGATTTCTC AGTTTTCGAG TACCGACGCT
AACTCGCTTC AGTTGAAAGA GCTTAAGGAC GCGCGGGAGC GCCTGCAAGC CGGTAAGTTC
GGCATGTGTG AGCACGAATT CATCCTCACC ATCTACGGCG ACTCCATCGA AGAAGTCAAC
GAAGGCATCA ACGAAGTTAT CGCCGTGTTC GAGGAAAAGA ATCTCACGCT GATCCGCAAG
AAGCGCGGCA AGCTCATCAC GCAATACTTT GGCATGTTGC CGGGCAACTT TCTGACGGGC
CGGCTGGATG CAATGCCCGT TAGCACCGAC AATTTCGCGG CCTTTTTCCC GTTGCACAAC
TTTTTCACCG GCAACGCTGA AGGCAGCCAG TGGGGGAGTC CGATTGCCCT CATGGAGAGC
ACGAGTAACG GCCCGATCTT CATGAACTAC CACGTCTCCC GTCGCCGGCT GCGGAATCAG
GAAGTCAGGC TGGAATACAC CCCCGAAGAA AACGAGGAAG ACGAAGAGGA CGAGCAGGCA
GAGCAAGAGG GCATCATCAC GCCCAAGCGC AAAGCGCACA AGAAAGAGTT GGGCAACTAT
CAGGTGATTG GTCCCAGCGG TTCAGGCAAG ACGTTGACCA AGCTGATGCT TCGCACGCTC
ATGCGCAAGG TTCGTCCCGG AAAAGGCATG AAGCCTTTCA AGACGTTTGC ATGGGATAAG
GACTATGGCG AAGAAATTCT CGTCAATGCG CTCGGGGGCG TCTACTTCCG TTTGGAAGAC
GGAAAGCCCA CCGGCCTCAA TCCCTATGCG CTACAAAACA ATGAGGTGAA TTGCCAGTTC
ATCCATGAAC TTTTCATGTG GTGCGCTTGC AAAGACCCCG CGTATCTGCG GACTGGCGAC
GACGACAAGA TCCTCTCCGA TGTCATTCAG GACGTATATA AGCTCCCTGA GCATCTGCGT
CGCCCTGCGC GGATGATGGA CACCTTGCCC GGCAGCAGCA GTGCCGTACA AGGGCCGGGT
GGTGCGCGCA TCGTCAGTCT CAAGGCTGCG CTTGTGCGCT GGGTTGAAGG CGGCCAATAC
TCGTGGGTGC TCGACAATTC GCGAGACCTC TTCGACCTTA CGCGCGCTAA CGACTTCGGT
TTCGACATGA CGAAGTTTCT GAACAACGAC TTCGCGCGCA CGCCGATCCA GTTGCTTATC
AACCATAAGA TCGACCTGTC GGTTGACGGA AATCCGTTCG TGCTCGATAT CGCGGAAGCA
TGGAAAGCGC TCAAAGACCC ATTCATGCAG GAGTTCATCG GCGACAAGGC CAAGACCGTC
CGTAAGTTGC AGGGGATCAT CGGTCTCGAT ACCCAAGACC CGACTGACCT CAGTACGTCG
CCGATCCGTG GCACGCTGCT TCAGCAATTC CCCACGCAGA TCATTCTTCC GAACGACCGC
GCCAAGCGCG AGGATTACGT CGAAGGGCTC GGCCTGACTG ATCGGGAATA TTCGCTCGTG
CGTGAAGGCA TGCTGGACGA GCCCGGCAAG TTCCTCTTCA AGCAGGGTAA CGACTCGGTA
GTTGTTCGCA ACGACCTTGG CGGCATGGAC GACATGATCG CCGTTCTTTC GGCCAGTATC
GACAACGTTC CGCTGGTTCG TGAGCTTATC GAAGCCCACG GGAACAAGCC TGAAATCTGG
CTTCCGCAAT TCTTCCGTCA GAGGGTTTAA
|
|---|
| Protein sequence | MTVYDELIAK EEPATKYIPY SKQITPTTCT TVERDLTRTI RCDGVPFETM SDEELNGFTR
SWFAAINTLG ANNNRVALWS HVVRSKLRYD LSGIKYDNYF SQLFGDQIAE RVGKKTFFQN
ELFLSPVYRP APGRAERIGA ALDKQGGSDV LAAARDEIDR ITNQLVRSLR RYNPSVLGVE
EFDGEKPAIS HLQAFYGRLL NADVGPVPLD SYSVRFAIQR NELHFGREII EIEGPVSSRY
AGVVGLKAPY GAENAKVNIF HGLLRLPYEF VLSQSLTFLP LNKADKFLQT QISQFSSTDA
NSLQLKELKD ARERLQAGKF GMCEHEFILT IYGDSIEEVN EGINEVIAVF EEKNLTLIRK
KRGKLITQYF GMLPGNFLTG RLDAMPVSTD NFAAFFPLHN FFTGNAEGSQ WGSPIALMES
TSNGPIFMNY HVSRRRLRNQ EVRLEYTPEE NEEDEEDEQA EQEGIITPKR KAHKKELGNY
QVIGPSGSGK TLTKLMLRTL MRKVRPGKGM KPFKTFAWDK DYGEEILVNA LGGVYFRLED
GKPTGLNPYA LQNNEVNCQF IHELFMWCAC KDPAYLRTGD DDKILSDVIQ DVYKLPEHLR
RPARMMDTLP GSSSAVQGPG GARIVSLKAA LVRWVEGGQY SWVLDNSRDL FDLTRANDFG
FDMTKFLNND FARTPIQLLI NHKIDLSVDG NPFVLDIAEA WKALKDPFMQ EFIGDKAKTV
RKLQGIIGLD TQDPTDLSTS PIRGTLLQQF PTQIILPNDR AKREDYVEGL GLTDREYSLV
REGMLDEPGK FLFKQGNDSV VVRNDLGGMD DMIAVLSASI DNVPLVRELI EAHGNKPEIW
LPQFFRQRV
|
|---|
| |