| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_7342 |
|---|
| Symbol | |
|---|
| ID | 6280628 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010679 |
|---|
| Strand | + |
|---|
| Start bp | 66891 |
|---|
| End bp | 71351 |
|---|
| Gene Length | 4461 bp |
|---|
| Protein Length | 1486 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 642619521 |
|---|
| Product | conjugative relaxase domain protein |
|---|
| Protein accession | YP_001893556 |
|---|
| Protein GI | 187921967 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
|---|
| TIGRFAM ID | [TIGR02686] conjugative relaxase domain, TrwC/TraI family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.113583 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCACTT TTGATTTTGT CGGCAGCTCT GCTGAAGCAG CCAACTACTA CGAAGAGACC
GACGACTACT ACACGAAGCC CGGTCATCGC GGCGAATGGG ACGGTGAAGG TGCCAAAGCA
CTTGGCCTGG AAGGCGGCGT AGATCGACAG ATATTCATGG ACCTGCTTGA CGGTCGCCTG
CCGGACGGCC GACAGGCGCG TAAGTCGATG CCACACACGC AGAAAGATGG GAGCAAAAGT
GCCCCGCGTC TTGGCATTGA CTTCACATTC AACGCACCCA AGAGCGTGAG CATCGTCGCG
CTCGTCAAGA ATGACCGCCG CGTAATCGAA GCGCACGACG CGGCAGTAAA GGATGCCCTG
GCGATGATGG AAAGCCGTGC GATCGCGCGG CAGAAGTACC GCGGCATTTC TTTTCGGGAG
AAGACCGGCA AGCTGATCGT CGCGAAATTT CAGCATGACC TTTCCCGCGA TCAAGACCCA
CACCTTCACA CGCACGCAGT CACAATGAAC CTCACGCAGC GTCGCGACGG CCGTTGGGTT
GCGCTCGCTA ACGAAGACAT GCTGAAGTCC GTCAAAGTGG TCGGTGCGTA CTATCGCGCC
CAGCTCGCAC AGTACCTCAC GAACATGGGG TACGACATTC GAGCAACGCG AAATGGCTTC
GAAATGGCTT CCGTACCAGA TGAGGCAATC AAACTTTTCA GTCAGCGCAG CCGCACCATT
GAAGAGGAAC TGGCGAAGAG CGGGCTCACG CGAGAGACCG CAACGGGAGA GTTGAAGCAG
AACATCACAA AAGACACCCG TGCGGAAAAA ACCGATGCGA ACCGTGCGGC GTTGCGGCAG
GAATGGGCTA ACGCACTTGC AGCGGCCGGA ATTGACCTCG GCCCGATGAT GGCTGACCAT
GAGGCCGCGC CTGTACCCGA CACCAAATTC GTTACCGCCG AAGGTGACAC GTATATCGTT
CACCCGGACG GTACAACTAC TCGCGATGAG CCCGACGCCG GACAAGGTGA ACCGGACTCG
CCGCAGTCGC AGCCAACGTC GCCCGAAGCA GAACAACCGG CCATACCGAC GCCGGCAGCT
CCCGACAACG ATCACTTGGC GCAACTGGCC GTAACGGGAT TTGCGACTGC CAAAGGGTCG
ACGTACACGG TGCATGAGGA CGGCACCACG ACGCGCGATA AGGCGGCCCG CGCCGATGTC
GGCCACGAAG GCGACAGCGG CATCAAGCCA CGCACAGATC GCACGGTGTA TGTTGAGAAC
GATGCGTCGC GTCTGTCTGC CGCCGGCTTG AACGGCCTTG ACGAACACGG TGCGCGCGTT
GTCATCAAGG ACGGCAAGGC AACCCTGCTT ACGTGGAACG AGCGCGGGAA CAGATGGGGA
GCTTCGCCGT CCAGTCGAGA CGTACCCGTG TTCGACAAGC CAGCGGTCGG ACTGTACCCA
CTCGAATTGT GGAAACTTTC CGATGACGTT CCCGGTTATG AGGCGTACCG TGGGATGCAC
GCCGGCAACA AGATCACCGA ACTGCGTCAC GACGGCCCCG CGCCGGATCG CGTCGCACAG
GACGATGAGA GTCCCGCGCA GCACGACGAA AGCGCCGATG CAGCGCGCGC CGATGCGCGG
CCTGCCGACG TTAGCAAACC GGCACCTACG CAGCCGGCCG CGCTCGCACC AAAGCGAGCA
GAGCACACGT TTTATGTGAC AGAGCGCAAT GCTGAAACCC TTGCCTATGT GCAGACGCGA
GGCGAGGGCA AACGGATCGT TCGTATGGAC GACGGCAAGT ACGCCGTGGC TTATACCACT
GGCAACAAGG CGGGCGAGGT TGATCCTCGT ACTGTTGTTG ACGCATCGAC GCGGCCAGCA
GCCGGTCTAG TTCCTGTCGA GTTGTGGGAA AACGGGGGGC GCGTTCGGTT CGGCTCGCGT
ATTGCATCCA TCGAACAGCC GAAGCCGATC TACGGGCGCG AGAAGTCACC GGCACCCGGC
GACATCAGGC TCTATCGAGG CGAAGGCGGA ACACTCACAG GGTCCGTACC AGCCGGTAAC
TGGTGGACTA CCAACCCCGC CAAAGCAGCC AGGTACGGCG ACGTTTTCTA CGTCGACTTG
CCGCGCGAGT TTGTTGGAAA CAATTTCGCC CAGGGACACA ACGGAACGGA CGAATATTTT
TTTGCCGGCT CAGATGAGAC ATGGCGAACC AAGGTGCGTC CGCTAGGCGA CTCGCATCCG
ATGCGACCGT CTTCGGCGAC TGATGAGCAG CCGACCCAGC CAGCGGGACA AGAGCAGGAA
ACCAACTGGT TGAATGGAAT TCAGCAGGCA GGGCAGCGCA TTTTTGATGC GGTACGTGGG
AAAGGGAAGG GCGATGCCGC CAACGAGCCC CCTACGCCCG AAAATGCCGA GTCGCCAATG
ACCCCGCAAG AGGTCGCGCG TAACGCTGTC GATTTTGCGA TTGAGCACTT GTCCGAGCGG
CAAGGCATTT TCACGAAGAG CGAGATACTT GAGCGCGCAT ATATGCGTTC GCTTGGCGCG
ACAGAGGAAG TCAACGACGA GCTGGCGAAT GCGGTTGAAG ACGGCCGTCT CGTTGCCGAA
CTGCCGCTGT TTCAGAGCGC AAAGTCTTTT TCGCGTGACG TACATCAACA GACGATTGAC
CCGCATTTCG ACAAATTCCG GCATGACAAC GACATCCACA AGCTCACGAA AGAATCGTGG
GTGTCCCTTC TGGTAAACGT TGAAGGCTAC TCCCCCGAGC GAGCACAGAG GACCGTCGAG
GAATCAATCC GAAACGGCCG GCTTGTCGAG ACCGAGCAAC GTTTTACCAC GCGTGAAATG
AGGCAAACGG AATCCGAAAT TCTCTGGATG GAGCGAACCG GACGCGGCAC GGTTGAACCG
CTTCGCACCG CTGAACAGGC AGAAGCAATG CTTGCGTCGA CCGGACTGAA TCCGGGGCAG
AAAGAGGCGG CCCAACTGGT TCTCACGTCG CCCAACCGTT TCATCGGCAT ACAAGGTTAT
GCCGGCGTCG GCAAGAGTCA TTTGATGAGT ACCGTCGTTC AGGAAATCAA GATGGAGGCC
GCGCAACAGG CCGAGACGTT AGGCTACAAA GTAGTGGGTC TTGCGCCTTA TGGTTCTCAG
AACAAGGCAT TGCAAGAGTT GGGTATGGAA TCGCAGACTT TGGCCTCATT CCTCGTGCGC
GAACCTGATC CTGAACTTCT TGGGCCGAAA ACCATCATCT TTCTCGATGA GGCCAGTGTT
GTTTCCGCCC ACCAGATGAA AGACCTTATG GCTCGCGTCG AACAGAGTGG GGCGCGGCTG
GTCATGATCG GCGACCGTAA GCAGACGCAG GCCGTCGAAG CTGGCAAGCC ATTCGAGCAG
CTACAGGACG GCGGCATGGC TCTAGCCCAC GTCACCGAGA TTCAACGTCA GAAGGATGCT
ACCTTGAAGG CCGCAGTAGA AAAGGCGGCC AACAACAATA TCGGCGGCTC GGTGAAGCTC
CTGGAGAAAA ACACCGTGCA ACTGAAGAAA GAAAAAGCCC GGCATGGGCG GCTCGCCGAT
GACTACGTGA AGATGCCTGA AGAGCAGCGC GACGGCACTC TGATTGTTGT CGGCACAAAC
GAGACTCGCA GAAAAATCAA CGAACTGGTA AGAGACAAGC TGAAGCTACC GGAAGGTGAA
TTGGTTCGCG CGCTTGAGTC CTACGATATG AGCAGGGCAG AGCACAAACA GGCGTCAAGT
TATCAGCAAG GCGTCGTGTT GATTGCCGAA CGGCCCGGCG AACATGGTCT TGACCGAGGT
GTCCACTACA CCGTCAGGTC AGCAGATGCG CGCGGCAATA CGCTGACCGT TTCTGATGCG
GCCGGCAACG TGCGCTCGCT CGATGCCACA CATCTTAGCG GCGTATCCAC TTACACCCTC
ACGGACATTC CCATCGTCAA GGGTGATTGG CTTCGTATCA CACGCAACGA CAATCGCCAG
GGCGTGTTTA ACGGCGAGCG ACATCGCGTT CTTTCGGTTG ACAAGGATTC CGTCGTGCTT
GAGAACGGTG CGAAGCTCTC CCGTGCATCG GCGATTCACG CGCAGCACGG GTATGCGCAG
ACCGTTCACA GCGCGCAGGG GTTGACACGG CACGGTGTAC TGATCGAGGC CGATACACGC
AGCCTCACCA GTAACCGTGC CGTGTGGTAT GTCGCAATCT CACGCGCGCA ACATGCCCTG
AAAATTTACA CCGACGATGC CGGCGGCCTC GCCCGCGTCA TGGCCCGCGA GCCAAAAAAG
TATGCTGCGC TCGAACTTCG TGACGAGCGG CGAGAGAAGG TCATTTTCGA CGCCTTGTCC
GCATCCCGCA CGTTGCAGCA GCAGAGCAGG GGGGCGGTGA AGAAGACGTT GCATGCCGAT
GCCACCAAAC CTCGCGCGCG GCCAACGCAC CAGGCGCGGC AGTCTCACCA GCGTTCCTCG
CGACGCGGCC CAAAGCTCTA A
|
|---|
| Protein sequence | MLTFDFVGSS AEAANYYEET DDYYTKPGHR GEWDGEGAKA LGLEGGVDRQ IFMDLLDGRL
PDGRQARKSM PHTQKDGSKS APRLGIDFTF NAPKSVSIVA LVKNDRRVIE AHDAAVKDAL
AMMESRAIAR QKYRGISFRE KTGKLIVAKF QHDLSRDQDP HLHTHAVTMN LTQRRDGRWV
ALANEDMLKS VKVVGAYYRA QLAQYLTNMG YDIRATRNGF EMASVPDEAI KLFSQRSRTI
EEELAKSGLT RETATGELKQ NITKDTRAEK TDANRAALRQ EWANALAAAG IDLGPMMADH
EAAPVPDTKF VTAEGDTYIV HPDGTTTRDE PDAGQGEPDS PQSQPTSPEA EQPAIPTPAA
PDNDHLAQLA VTGFATAKGS TYTVHEDGTT TRDKAARADV GHEGDSGIKP RTDRTVYVEN
DASRLSAAGL NGLDEHGARV VIKDGKATLL TWNERGNRWG ASPSSRDVPV FDKPAVGLYP
LELWKLSDDV PGYEAYRGMH AGNKITELRH DGPAPDRVAQ DDESPAQHDE SADAARADAR
PADVSKPAPT QPAALAPKRA EHTFYVTERN AETLAYVQTR GEGKRIVRMD DGKYAVAYTT
GNKAGEVDPR TVVDASTRPA AGLVPVELWE NGGRVRFGSR IASIEQPKPI YGREKSPAPG
DIRLYRGEGG TLTGSVPAGN WWTTNPAKAA RYGDVFYVDL PREFVGNNFA QGHNGTDEYF
FAGSDETWRT KVRPLGDSHP MRPSSATDEQ PTQPAGQEQE TNWLNGIQQA GQRIFDAVRG
KGKGDAANEP PTPENAESPM TPQEVARNAV DFAIEHLSER QGIFTKSEIL ERAYMRSLGA
TEEVNDELAN AVEDGRLVAE LPLFQSAKSF SRDVHQQTID PHFDKFRHDN DIHKLTKESW
VSLLVNVEGY SPERAQRTVE ESIRNGRLVE TEQRFTTREM RQTESEILWM ERTGRGTVEP
LRTAEQAEAM LASTGLNPGQ KEAAQLVLTS PNRFIGIQGY AGVGKSHLMS TVVQEIKMEA
AQQAETLGYK VVGLAPYGSQ NKALQELGME SQTLASFLVR EPDPELLGPK TIIFLDEASV
VSAHQMKDLM ARVEQSGARL VMIGDRKQTQ AVEAGKPFEQ LQDGGMALAH VTEIQRQKDA
TLKAAVEKAA NNNIGGSVKL LEKNTVQLKK EKARHGRLAD DYVKMPEEQR DGTLIVVGTN
ETRRKINELV RDKLKLPEGE LVRALESYDM SRAEHKQASS YQQGVVLIAE RPGEHGLDRG
VHYTVRSADA RGNTLTVSDA AGNVRSLDAT HLSGVSTYTL TDIPIVKGDW LRITRNDNRQ
GVFNGERHRV LSVDKDSVVL ENGAKLSRAS AIHAQHGYAQ TVHSAQGLTR HGVLIEADTR
SLTSNRAVWY VAISRAQHAL KIYTDDAGGL ARVMAREPKK YAALELRDER REKVIFDALS
ASRTLQQQSR GAVKKTLHAD ATKPRARPTH QARQSHQRSS RRGPKL
|
|---|
| |