| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_7325 |
|---|
| Symbol | |
|---|
| ID | 6280582 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010679 |
|---|
| Strand | + |
|---|
| Start bp | 54268 |
|---|
| End bp | 56151 |
|---|
| Gene Length | 1884 bp |
|---|
| Protein Length | 627 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642619504 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_001893539 |
|---|
| Protein GI | 187921950 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00394718 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGCC TTTACGACGA AGTGCACATG CCGCTCGCGG AGGGCACAAT GCTGCTGCAC
CCCGAGCGAG CGCTGCTCAA GTGGGAAGGC ATGAGCAGCC GTTCCGATAT CGGGCAGATC
TGCTACCTGA GGCGTGACAC GTCAAGCTCG CACCGCGCGC GACGAACTTT CGATATCCTG
AGCTTCAGCA TCGAACGCGT CAGGGTCGTA CGCCTGCTGG TGACGCAGCT TTCCGGGCGT
ATGGCCCTTG GCGCGATGCG TCCGGCAACG ATCTCGATAG CGCTGCGCGT CGTGCTTGAT
TTCGTCAATT GGGCCGACAG ACAGGGCTTG CATCAGGTGC TTTGTGACGA GAAGGCTACG
GCGGAGGCAG TTCATCGCTA CTTCCGCGAG AAACGCGAAC AGGTTTCGCT GGGCAATCTG
AACCGCAATT CCGTCGGCCA CGATCAGCGT AATCTGTTGT CGATGCTCCG TGAGTTTTTC
GGAAACGACG ACTTCTGCAC CGACGCGAGG GTGCTGCGCC GCCAACTGGA TGCCTCTGTG
CCGACTGCTG TGCCTGACAC CGAGGCACAA GCCGCCCTGC TCGCGTGGGC TGACGCGCTC
TTCACCGGCA TCAGCACCCT GGTGCTCGAC TTCAAGTCGT ACCCGGTGCG CGTAAGCACG
GCGCGTGGCG AGAGTCTTTG CCTAGTTCCG CACAGACACC ACCGTCGTGA AGACGACAAC
TTGCACGGCC ACCTGCTTGG CTGGAACCTG GAGACCGGGG AGCTGCGCAC GCGGGAAGAA
ATCGCGACGC ACATGGCTGC GGCAGGCGCT AAAGATCCTC GTGCGCGTGC GTGGATGATC
GCCTCGTTTG CGGCTAAACA TCTTAGGGCT GCGAACGAGG ATGCGCAATC AGCGATCCGT
CGCTCGCACG CTTCAATGGC GACCCTTTGC TTCGCCGCGC TGTTCCTGGC CGAAACGGGC
GTCAACCTCG CGCAACTGCT GGCCATGAAG TGGAGCCCGG AGCTTGTCGC GAGCCTGCAG
GATACGTCAG TTGTACGTCA GACGTTTCGC GAGATCAAGT ACCGTGCAGG CGGGAAGGGG
GTGACGTTCA CCGTCTCGCT GGGCTTCATG CCGAAGCTCA AGACGTATCT GGCGTTGCGA
GAGTATCTGG TGCAGAACGC GGACTGCGAC GCGTTGTTCA TTCTAGCCGG GCATTACGCA
AAGCGACGAC GGCCAATGGG TCTCCCAACT CAATTTCTGG CTCAGCTTTA CAGTCGACTC
GATACGCTCG GGATCGTGCT ACCGCGCATT ACCGCACGTC AGTGGCGTGC GGCGAAGCAG
GATTGGGCGG TGAGCAACCA CGACCCTGTC GTCGCAGCCA GACTGATGGG CCACTCCTTG
GCCACGGCGC TGCGCTCATA CTCGAACGGC ACAGACGCCG CGCACAAGGC CGAGATGGGC
GCGTTCCTCG CTTCGGTCGA GAAGACCGTG CTGAAGCCCG GCAACGACCC GGCGGGCAGC
ATCAGGAGCG CGGTGGGCGT CTGCATCGAG TTCCACAAAC CTGCGCCGAT CGCAGCTTCA
GTCACCGTAC AGCCTGACTG CCGCTCGACC GAAGGATGTC TCTTCTGCGA CCAGTACCGC
GTGCACGCCG ACGCCGCCGA CATCCGCAAG CTGCTGGGCT GCCGTCACTG CGTCAGGCTC
GTGAGCGGGC GTGCTGACTC GATCGAGCAG TACGACACAT CGTTCGGCGC CGTGCTGCGG
CGCGTTGACT TCCTGCTGGA TGAGCTGCGC AAGCGCGACG CCGCGCTGGT CGATCAGATC
GAGCACGACG TTGATATCGA AGGGAATCTG GACGCGTTCT GGTCGGCCAA GCTCGACCAG
CTTTACGAAC TGGGAGTGGC ATGA
|
|---|
| Protein sequence | MNRLYDEVHM PLAEGTMLLH PERALLKWEG MSSRSDIGQI CYLRRDTSSS HRARRTFDIL
SFSIERVRVV RLLVTQLSGR MALGAMRPAT ISIALRVVLD FVNWADRQGL HQVLCDEKAT
AEAVHRYFRE KREQVSLGNL NRNSVGHDQR NLLSMLREFF GNDDFCTDAR VLRRQLDASV
PTAVPDTEAQ AALLAWADAL FTGISTLVLD FKSYPVRVST ARGESLCLVP HRHHRREDDN
LHGHLLGWNL ETGELRTREE IATHMAAAGA KDPRARAWMI ASFAAKHLRA ANEDAQSAIR
RSHASMATLC FAALFLAETG VNLAQLLAMK WSPELVASLQ DTSVVRQTFR EIKYRAGGKG
VTFTVSLGFM PKLKTYLALR EYLVQNADCD ALFILAGHYA KRRRPMGLPT QFLAQLYSRL
DTLGIVLPRI TARQWRAAKQ DWAVSNHDPV VAARLMGHSL ATALRSYSNG TDAAHKAEMG
AFLASVEKTV LKPGNDPAGS IRSAVGVCIE FHKPAPIAAS VTVQPDCRST EGCLFCDQYR
VHADAADIRK LLGCRHCVRL VSGRADSIEQ YDTSFGAVLR RVDFLLDELR KRDAALVDQI
EHDVDIEGNL DAFWSAKLDQ LYELGVA
|
|---|
| |