| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_7246 |
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| Symbol | |
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| ID | 6280716 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010679 |
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| Strand | + |
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| Start bp | 4608 |
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| End bp | 6626 |
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| Gene Length | 2019 bp |
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| Protein Length | 672 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 642619426 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001893461 |
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| Protein GI | 187921872 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCAAC TGATCCAACG TTTGAAGCAC CGCTTCGGCC AGCTTGGCCG CAAGGTTCCC
GGTGCGCAAC AGCCGGCACA GGTAGCGCCG ATCACACTGC CGCAAAAGCA GTTTGATCGC
GTCGTCGTGC GTTCATCTGA CGTGCGTGAG GGCGAAATCT TCAATGGTGT TGTTGTTGCT
CAAAGCGAAG TCATCGCCGT TAGCGACCTG CCCAAGTTCA CGCGGACTCT TCAGAAAGAA
TTCGTGCTGC CAGAACACCT TGACCACATC TGTCCAATCC AGATAGCCGG CGAAGCCACG
GACGGCAAGC GAACGTTCGC TGTCGTGGTC GTTGAGCACA TGTTGAAGTC GGACATGATG
GAGGCGGTCA TCCAGGCACT CTCGCGCGAG TACCGGGCGG CGTCCCCTTG CGTGTATGTT
GCGACGCAGA ACGTCCTTTC GGAGCTGGCC CTTCGCTCGC GCGACCCGCA AGGCGTCAAG
ACGAACGAAA CCGAGCGCGA GAGCACGCTC TGGAATCACT TCGTCAACTT CGTTATGTTC
GCCGTCGAAA ACGAAGTGTC CGACTTCCAT ATCCGCCTTC GAACTAGCCA GGAATATTCG
CAAGTCAGCT TCCGTATGGA CGGTAGCGTT GCGAGGCCAC GACGTTTTCG TGTATTGACA
TCGCAGCTCT CGAACATCAT GGGCTATCTG TACAGCTTCC ACGGTAATTC GAATACGGCC
AACTACTTTA GTCTGTCCTT GCCGCTTGAG TGTCAGCTTG AAGAGACTAT AGCCGGGATG
CGTATGTCCT TTCGCTGGGG GCAGTTGCCG GTCAGTGACG GACTGAAAAT CGTGCTGCGG
ATGCAGCGGC TCGATGCGGA AGCAGCGTTC ACGTCGCTCG GTCGCGAGAA AGGCGGTGCA
GGTTTCACCG CACACCAGGT TCCCATTTGG GAGCGGAACC TGTACTCCGC AGGCGGCGCT
ATTGTCATGT CCGGCGTGGT CAACTCAGGT AAGAGTAAGA CCGTCTACAC GCTGGTTAGC
ATGCTGCCCG ACGACGTGGA AATCAATACG GCTGAAGACC CTGTTGAAAA TCCACTTCGT
CACCCCGGCG CTAATCAGCA CTCTACGGCG AGTCGTCTTG GCGAAGATTC CAACAAGGAT
ACGTTCACTG CGTTCAAGCT CATGAACAAG CGGATGGACC CGGACGTGAC GTGGATCGGC
GAATTGCGTG ACCGCAATAC GGCGAGCGCC TTCCGCGATT CTGTGCTGTC CGGTCAGCGT
GTCCTCACGA CAATCCACGC TCCCAACGCC CTCATGATTC CCGAACGCCT GGTATCCGAG
GAATTCGGGC TCACGCGTGA GCTTATATCG CTGCCGGAAT TCCTGAAGCT GCTCGTCTAT
CAGGCGCTCG TGCCGAAGAA CTGTGCGAAG TGCTCGCTCG ATCCTACTGC ACCAGAGACG
GTGAAACTGC TGGACGACAT CCTCTCTGCC GGAGCTGTGC ATGACCCCGT AGTGACGCGG
CTCGCTCGCA AGGCGAGGCG CATCGCCGAC CCTGCAATGC TCCATCGCGT CGAACGCCTG
TTCCACTTCG ACGTGAAGAG CATGCGTGTG CGCAATCCTC TCGGTTGCCC CCATTGCGCT
CGCGAAGGCG TGCCGGACCT CAACGGCCTG CGTGGTCGCC AACTCGTCGC GCAAATGGTT
GAGCCGAACT ACGACATGCT CGACACCATT CGCGCCGCAG ACAACATCGG CCTTTACCGG
CTCTATCGGA GCATGCGAAT CGCTGGCTTC GATAGCGATA ACTCGGACGG AAAGACCCCG
ATGGAAATCG CTATGTTCAA CGTCACACAG GGCGAACTCT GCTTCTCAGA AGTCGAACGC
CGCTTCCAGA CAATCGACGC TTACGAACAC CAGCTCAAGC AGATGGTGTC GCAGGCCGAA
CGATTCTCCG CTCCGCGCCA CGTCAACGGT AGCAGTAACG GAGCAGCGGA AATACGCATG
CCTTCTGCCG TTGAAGAAAC GGCCGCAGCC ATCCAGTGA
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| Protein sequence | MKQLIQRLKH RFGQLGRKVP GAQQPAQVAP ITLPQKQFDR VVVRSSDVRE GEIFNGVVVA
QSEVIAVSDL PKFTRTLQKE FVLPEHLDHI CPIQIAGEAT DGKRTFAVVV VEHMLKSDMM
EAVIQALSRE YRAASPCVYV ATQNVLSELA LRSRDPQGVK TNETERESTL WNHFVNFVMF
AVENEVSDFH IRLRTSQEYS QVSFRMDGSV ARPRRFRVLT SQLSNIMGYL YSFHGNSNTA
NYFSLSLPLE CQLEETIAGM RMSFRWGQLP VSDGLKIVLR MQRLDAEAAF TSLGREKGGA
GFTAHQVPIW ERNLYSAGGA IVMSGVVNSG KSKTVYTLVS MLPDDVEINT AEDPVENPLR
HPGANQHSTA SRLGEDSNKD TFTAFKLMNK RMDPDVTWIG ELRDRNTASA FRDSVLSGQR
VLTTIHAPNA LMIPERLVSE EFGLTRELIS LPEFLKLLVY QALVPKNCAK CSLDPTAPET
VKLLDDILSA GAVHDPVVTR LARKARRIAD PAMLHRVERL FHFDVKSMRV RNPLGCPHCA
REGVPDLNGL RGRQLVAQMV EPNYDMLDTI RAADNIGLYR LYRSMRIAGF DSDNSDGKTP
MEIAMFNVTQ GELCFSEVER RFQTIDAYEH QLKQMVSQAE RFSAPRHVNG SSNGAAEIRM
PSAVEETAAA IQ
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