| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4937 |
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| Symbol | |
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| ID | 6285852 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010678 |
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| Strand | + |
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| Start bp | 1290250 |
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| End bp | 1293192 |
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| Gene Length | 2943 bp |
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| Protein Length | 980 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642619411 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001893446 |
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| Protein GI | 187927101 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.157609 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTCGA TCCCACGGTT GCTGCAACGC GCTTTCGACT ATCTCTCACA GGACCTGCTT
CGCCGCGTTG AGATTCGCCA CCGGTTGGTT GCCGCGTTCA TCCTGCTGTC TCTGCTGCCG
ATCTGCATTT CGGCCAGCAT TTCCTATGTG AACTCGATCG CGGCGATCAA GGAGAACGCA
GAGATCTTCT CGAAGGAGGT GGTCAAGCAA GTCTCGAGAA ACATCGAATT GCGCATGCGG
CAGATCGAGG CGGAAAGCAA CTTGCTGGTG CTCTCCAATC AGGTTCAAGG CGCGCTTGCC
AGGGCTGCGA GCGGCAACGG CAAGGAGCAA AGCGAGGCCC GCCAGGACAT GGCGCGGCTG
CTCCTCGAGC ACTATGGATC GGTTGATTTC ATCAATCAGA AATATCTTCT CGACAAGAAC
AACCGGATTC TGGACACACA GGCCGCCGCA CAACTGACCC AAGGTGTGAC ACGCCTCGTC
TCGCGCGCTC AGGACGTGCA TGGGCACACG TACTGGGGCA GCTACGACAA CGGTGTCGGA
CAGCAAAACG TCGGGGTGGT GCGCGCCATC ATCGACAAGA ACAGCAACCG GCAGCTCGGC
AATCTGGTGC TGATCGTCCG CCCGGCATAC TTCTCGACCA TCTTCAACGA CGTCGCCACG
GGCAGCGGTA CGCAAATCTT CATTCTCGAT GCGAGTAACG AGGTCATCAT CCGGGCCGCC
GACGCAGCGA ATGACACCGG CGCACTACCC GAACCCGGCC TGCTCGAGAA TATCGCGCGC
AACGCGACAG CGGGCGAGGC GCGAAGCTTT GTTGCGATCG AGGGAAAGCG CGGAGGACGT
TATTTGGCTG CGTACGCCAA AATCCCCGGC ACGACCTGGT TCGTGGTGAG CACCATTGCG
GAGAAAAAAC TGACAGCCGA GGCCCAAGCG GTGCGAAACC AGATCGCGCT GGTCGGCATC
TCGGGGGTTC TGTTGTCGAT CTTCCTTGCT TACTTCATCT CGCACAGCAT TTCTGCTCCG
CTCAGGGAGC TGGTGCGCAA GGTGCATGAT ACCGGCGACG ATGCCGGCGC CCAGGTGGAC
GAAGGAAAGC ACGTGGAAGC CGGGGCCCGC GCCAAGGACG AACTGAGCAG GCTCGCGCAG
CGCTTCGAGA GAATGCGCGA AGCGATCAAG CAGAAGATCG AGAAGATCAA CGAGATCAAT
GCCTCGCTGG AGCAAACCGT CATCGAACGG ACGGCAGAGC TCGTCACGCG GGAACGGGAG
TCGCGCACAC TGATCGAGAA CTCGCCCGAT ACGATTTCCC GCTATGACCG CGAGTCCCGC
CGCATCTACG CCAATCCTGC GTTCTGTGCC TCGGCGGGTT GCAGTCTTAC AGAAGCGCTC
GGCAAGCGGC CTTCGGAACT CCCCGGCGGC GACAACGCGC GCGTCTACGA AAAGATCATC
AGCGACGTCA TTTCAAGCGG TACAAGCGCG CAATTCGAAC TGAGATGGGC CGGCAAGGAT
GGGCAGGAAC AATGCTCGCA CGTCCGCCTC ACACCGGAGA CCGACCTCGC CGGCAATGTG
CTTTCCGTGT TGGCGGTTGG TCGTGATCTC TCCGACCGGA TGGCGTTTGA GGCAACGATC
TGGAAACAGG CCAATTTCGA TGCACTGACG GGCCTGCCGA ATCGCCAGAT GTTCCATGAG
CGCCTCGCTC AGGAAGCCAG TCAGCCAGGC CGTATCGGGC GGCGAATGGC GTTGATGCTG
ATCGATCTCG ACCGCTTCAA GGAGGTCAAC GACTCGCTCG GGCACGACAG GGGAGATACG
TTGCTGATCG AGGCCGGCAA GCGCATTGGT GCGTGCGTGC GCCAATCGGA TACGGTCGCC
CGTCTTGGCG GCGATGAGTT CACTGTCATC CTGCCCAATC TGGACGACGC GGAGAGCGTC
GAGCGGATCG CCAGCACCAT CATCGACAAG TTGGCCGAGC CATTCAAACT AGGCACGGAC
GAAGCCTTCG TTTCCGCCAG CGTTGGCGTC ACGTTTTACC CCGACGACGC CCACGATCTT
GACGTGCTGT TCAAGAACGC CGATCAAGCC ATGTATGCGG CCAAGAACGC TGGGCGCAAT
CGCTTCAGTT ACTTCAAGCC CGATATGCAG GTCGAGGCCG AAAAGCGCCT GCGGCTCACC
AGCGATCTGC GCGTCGCGCT GCCCAGCGGC CAGTTTCAGG TCTACTACCA GCCGATCGTC
GAGCTCGCCA CGGGCGAGGT TTGCAAAGCC GAGGCGCTGA TCCGCTGGCT GCACCCAGAG
CGCGGCACCA TCAGCCCGCA TGATTTCATT TCCGTGGCGG AAGACACGGG CCTCATCGTT
TCCATCGGCG ATTGGGTATT CAAGCAGGCT GTGCAACAGG CGCGGCAATG GCGCGATCAA
TTCCATCCGT CTTTCCAGAT CAGCGTCAAC ATGTCTCCGG TGCAGATGCG CCAGGATGGC
CAACTGTGCG CGCGATGGTC CGACTTCCTT GCGCGCGAGG GCTTGCCGGT GCAGAGCGTG
ATGGTGGAAA TCACGGAAGG GCTGCTATTG CAGGCCGAAT CGCGGACTGA CGAGACGCTG
CTGGCTTTGC GCAGCGCGGG CATCGGGATC TCGATCGACG ACTTCGGGAC CGGTTACTCG
TCGCTTTCGT ATCTCCAGCG CTTCGATATT GACTACCTGA AGATCGATCG TTCATTCGTC
CACAACCTGA GCTTTGACGA AGACAACCAG GCGCTGTGCG AGGCAATGGT CGTCCTCGCA
CACAAACTGG GGCTCAAAGT CATTGCCGAA GGAGTGGAGA CCGCCGAGCA GCGGGATTTT
CTCAAGGCAG TCGATTGCGA TTTTGCGCAG GGCTTTCTTT ATTCGACGCC GGTTCTGCCG
CATGAATTCG AACGTCGGGT ATGGCCCATG AGCGAAAGAC GCGCCGCTGA TGCTTCAGCA
TGA
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| Protein sequence | MNSIPRLLQR AFDYLSQDLL RRVEIRHRLV AAFILLSLLP ICISASISYV NSIAAIKENA
EIFSKEVVKQ VSRNIELRMR QIEAESNLLV LSNQVQGALA RAASGNGKEQ SEARQDMARL
LLEHYGSVDF INQKYLLDKN NRILDTQAAA QLTQGVTRLV SRAQDVHGHT YWGSYDNGVG
QQNVGVVRAI IDKNSNRQLG NLVLIVRPAY FSTIFNDVAT GSGTQIFILD ASNEVIIRAA
DAANDTGALP EPGLLENIAR NATAGEARSF VAIEGKRGGR YLAAYAKIPG TTWFVVSTIA
EKKLTAEAQA VRNQIALVGI SGVLLSIFLA YFISHSISAP LRELVRKVHD TGDDAGAQVD
EGKHVEAGAR AKDELSRLAQ RFERMREAIK QKIEKINEIN ASLEQTVIER TAELVTRERE
SRTLIENSPD TISRYDRESR RIYANPAFCA SAGCSLTEAL GKRPSELPGG DNARVYEKII
SDVISSGTSA QFELRWAGKD GQEQCSHVRL TPETDLAGNV LSVLAVGRDL SDRMAFEATI
WKQANFDALT GLPNRQMFHE RLAQEASQPG RIGRRMALML IDLDRFKEVN DSLGHDRGDT
LLIEAGKRIG ACVRQSDTVA RLGGDEFTVI LPNLDDAESV ERIASTIIDK LAEPFKLGTD
EAFVSASVGV TFYPDDAHDL DVLFKNADQA MYAAKNAGRN RFSYFKPDMQ VEAEKRLRLT
SDLRVALPSG QFQVYYQPIV ELATGEVCKA EALIRWLHPE RGTISPHDFI SVAEDTGLIV
SIGDWVFKQA VQQARQWRDQ FHPSFQISVN MSPVQMRQDG QLCARWSDFL AREGLPVQSV
MVEITEGLLL QAESRTDETL LALRSAGIGI SIDDFGTGYS SLSYLQRFDI DYLKIDRSFV
HNLSFDEDNQ ALCEAMVVLA HKLGLKVIAE GVETAEQRDF LKAVDCDFAQ GFLYSTPVLP
HEFERRVWPM SERRAADASA
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