Gene Rpic_4929 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_4929 
Symbol 
ID6285844 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010678 
Strand
Start bp1279970 
End bp1282096 
Gene Length2127 bp 
Protein Length708 aa 
Translation table11 
GC content68% 
IMG OID642619405 
Product3-hydroxyacyl-CoA dehydrogenase NAD-binding 
Protein accessionYP_001893440 
Protein GI187927095 
COG category[I] Lipid transport and metabolism 
COG ID[COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.504064 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGACA TCACCATCGA CACCGACGGC ATCGCCACGC TCACGTGGAA CCAGCCGGGC 
CGCGCGCAGA ACGTGCTCAA CGGCGACACC TGCGCCGCCT TTTTTGCCGC CATCGACCGC
GTATGCGCCG ATGCCAGCGT CAAGGGCATT CTCGTCACCT CGGCCAAGGC GGATTTCATT
GCCGGCGGCG ACCTCGAATG GCTGCAGGCC AGCGACGACG CAGCCACGTT GTTTGATCGC
ACGTGCGAGC TGCACCGCAT GCTGCGCAAG CTGGAAACCT GCGGCAAACC CGTGGCCGCC
GCGCTGCCGG GCTCCACGCT GGGCGGCGGG TTGGAGATTG CGCTCGCCTG CCACTACCGC
GTGGCGGCCG ACAACGCCCG CGCGCGCTTT GGCCTGCCGG AAGTCACGCT GGGCCTCTTG
CCGGGTGGCG GCGGCACGCA GCGTCTGCCG CGCTTGATTG GTGTGCAGAA GGCGCTGCCG
ATGCTGCTGG AAGGCAAGCG CATCAAGGCG GCCGACGCGC TCAAGCTCGG CATTGTCGAT
GCGGTCGTCA ATGCGGGCGA GGAAGCCGAT GCCGCGCGCA CGTGGCTGCT GGGCGACGGC
CAGACCCGCG CGCAGCAGCC GTGGGACATC AAGGGCTACA AGGTGCCCGG GGGCGGCATC
GCCAGCCCCG CCGTGCAGCA GCTATTCACG GCGGCCAACG CCATGCTGCG GCAGAAGACC
TACGGCAACT ATCCGGCAGC GGCGAGCATC CTGTCGTGCG TGTACGAAGG GCTCATCACC
GATCTCGATA CGGGCCTCAA GACCGAGGCG CGCTACTTCG TGCAGGCGGT GCTGTCTCCG
GAAGCCCGCG CGATGATCCG TACCCTTTTC TTCAGCCTGA ACGCCGCCAA CAAGCTGGCC
GCGCGCCCGG CCGATGTGCC GGTGCGGCGC TACGCCAAGG TGGGCGTGCT CGGTGCCGGC
ATGATGGGTG CGGGCATTGC CTATGTCACC GCCAAGGCGG GGGTGCCCGT CGTGCTGCTC
GACACCACGC AAGAAGCTGC CGAACGCGGT AAAGACTATT CACGCAAGCT CGTCGAGAAA
CAGGTACAGC GCGGCCGCCT GCATGCCGAG CAGGCCGAAG CGCTGCTCGC CCGCATCAAA
CCGACCACCT CATACGCGGA CCTCGACGGC GCGGGCCTCA TCGTCGAGGC CGTATTCGAG
CAGCGCGAGA TCAAGGCCGA CGTCACGCGC ATGGCCGAAG CCGTGATCTC GCCGGACGCC
ATCTTCGCGT CCAACACCTC CACGCTGCCG ATTACCGGGC TGGCGGAGGC GAGCCAGCGG
CCGGGCAACT TCATCGGGCT GCATTTCTTC TCGCCGGTCG ACAAGATGCC GCTGGTGGAG
GTGATCGTCG CCCGGCAGAC CACGCGGGCC ACGCTGGCGC AGGCGCTCGA TTACGTGAAG
GCCATCGGCA TGACGCCCAT CGTCGTCAAT GACAGCCGAG GGTTCTATAC GAGCCGCGTG
TTCTCGACCT ACGTGCTCGA AGGCCTGGCG ATGCTCGCCG AAGGCGTGGC ACCCGCATTG
ATCGAGAATG CCGGGCTGCA GGCCGGCATG CCGGTCGGGC CGCTCGCGCT GATCGACGAA
GTCTCGAGCG AGCTGATCCA CAAGGTCAAC CAGCAAACCC GCGCCGACCT GGGTGTCGCC
TACATCGAGC GCCCCGGCGA AGCCGTGGCC GAGCGCATGG TGGCGCTGGG CCGCATCGGC
CGCAAGGCAG GCCAGGGCTT CTACGACTAC CCCGAAGGCG GCAGGAAGGC GCTCTGGCCG
GGCCTGGCCG CCGAGTATCC GCCGGCCGCC ACGCAACCTG ACGTGCAGAC CCTCGTCGAC
CGGCTGATCA CGGTGCAGGC CGTTGAAACC GCACGCTGTC TCGACGAAGG CGTGGTCACC
GACCCGCGCG ATGCCGATGT CGGTGCGCTG CTGGGTTGGG GATTCCCGGC TTTCCGCGGC
GGCCCGGTCT CGCATATCCA GCGCGTGGGC GTCGACGCGT TTGTCGAGCA GTGCGATCGT
CTGGCCGCCG ACCATGGCCG CCGCTTTGCG CCGCCCAAGC TGCTGCGGGA TATGGCGGAA
CAGCACGCGG TGTTCTATAC GCGGTAG
 
Protein sequence
MIDITIDTDG IATLTWNQPG RAQNVLNGDT CAAFFAAIDR VCADASVKGI LVTSAKADFI 
AGGDLEWLQA SDDAATLFDR TCELHRMLRK LETCGKPVAA ALPGSTLGGG LEIALACHYR
VAADNARARF GLPEVTLGLL PGGGGTQRLP RLIGVQKALP MLLEGKRIKA ADALKLGIVD
AVVNAGEEAD AARTWLLGDG QTRAQQPWDI KGYKVPGGGI ASPAVQQLFT AANAMLRQKT
YGNYPAAASI LSCVYEGLIT DLDTGLKTEA RYFVQAVLSP EARAMIRTLF FSLNAANKLA
ARPADVPVRR YAKVGVLGAG MMGAGIAYVT AKAGVPVVLL DTTQEAAERG KDYSRKLVEK
QVQRGRLHAE QAEALLARIK PTTSYADLDG AGLIVEAVFE QREIKADVTR MAEAVISPDA
IFASNTSTLP ITGLAEASQR PGNFIGLHFF SPVDKMPLVE VIVARQTTRA TLAQALDYVK
AIGMTPIVVN DSRGFYTSRV FSTYVLEGLA MLAEGVAPAL IENAGLQAGM PVGPLALIDE
VSSELIHKVN QQTRADLGVA YIERPGEAVA ERMVALGRIG RKAGQGFYDY PEGGRKALWP
GLAAEYPPAA TQPDVQTLVD RLITVQAVET ARCLDEGVVT DPRDADVGAL LGWGFPAFRG
GPVSHIQRVG VDAFVEQCDR LAADHGRRFA PPKLLRDMAE QHAVFYTR