| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4912 |
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| Symbol | |
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| ID | 6285583 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010678 |
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| Strand | + |
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| Start bp | 1263058 |
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| End bp | 1264428 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642619388 |
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| Product | Carbohydrate-selective porin OprB |
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| Protein accession | YP_001893423 |
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| Protein GI | 187927078 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3659] Carbohydrate-selective porin |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00363735 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGCTTG AACCCCGCTT CGATACCGTG TCGAAGCCCG CGCGCCAACC GGCCGCACGT
CGTCAATCCC GCGGCAAGCG CTTTGGTGCT TCCGCCATCG CTGCGGCAGT GCTCGCCCTT
GGTGCGGCCA GTGCACATGC GTATGACGTC ACCACCAGCC CGTACCTGCT TGGCGACTGG
GGCGGCCTGC GCACCCGACT GGCGGAGCAG GGCGTGACGT TCAACCTCGG CTATGGCAGC
GAAGTGGCAC ACAACTTCAG CGGCGGCACC GAGCACCTCA CGCGCTATAC CGATCAGTGG
GTAATGGGCG CGGCGCTGGA CCTGCAGAAG CTCTGGGGCT GGAAGGGTGG CACGTTCCAG
GCAACCGTTA CCGACCGCAA CGGCCGCAAC CTCGGCTCCG ATGCGAACAT CGGCAACAAC
ATGCTGATCC AGGAAGTCTA TGGCCGCGGC CAGACGTGGC ACCTGACGCA GTTCTGGCTG
AACCAGAAGC TGCTCGACGA CCGCCTGGAA ATCAAGGCCG GCCGCGTGAC GGTGGGCGAA
GACTTCTTCT CGTTCTCGTG CGACTTCCAG AACCTGACCT TCTGCGGCTC GCAGCCGGGC
AACCTGGTGG GCAACTACTG GGTGAACTGG CCGACGAGCC AATGGGGCGC CCGCGCCAAG
TTGCACACGT CGGCGGAAAC CTACGCGCAG GTCGGCGTGT ATCAGGTCAA CCCGAACTAC
GTGGATGACG AGTGGGCCCG CCACAACGGC TGGAAGCTGA ACAACCCGGG CGGCACCACC
GGCGCGCTGA TCCCGCTGGA ATTCGGCTGG ATGCCCAACA TTGAAGGGCG TCCGGGCACG
TATCGCGTGG GGGTCTGGTA CAACACCTCC AACGGCAAGG ACCTGTACGA AGACGTCAAC
GGCAACCCAC GCGGCATCAC CGGCCTGGAC GCGCGTCAGC ACAGCGGCCA GTACGGCGTC
TACCTGAACC TGCAGCAGCA GGTCACCGGC ACGGCCGGCG GGCGTGGCGC AACGGTGTTC
CTGAACTTCT CGCAGGCCGA TCGTGACACC GCGCAGACCG ATCATCAATT GTCGGTGGGC
GTGCAGTACA AGGGACCGTT CGATCGCCTG TCCGACACCA TCGGCTTTGC CGTGGGTGCG
ACGCACAATA ACGGCCGCTT TGCCGATTTC GTGCGCCAGA CCAACGCCCG AACCGGCGCA
AACACCGTGG TGGGTGACGG TTACGAATAT GTGAGCGAGC TCTACTACAG CTACTCTCCC
GTGCCGTCTG TGTACTTCCG TCCTAATCTG CAGTACATCC TGCATCCGGG TGGCACCACG
CAGAACAAGA ATGCCTTCGT GATCGGCCTC AAAACGGGCA TCACGTTCTA A
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| Protein sequence | MELEPRFDTV SKPARQPAAR RQSRGKRFGA SAIAAAVLAL GAASAHAYDV TTSPYLLGDW
GGLRTRLAEQ GVTFNLGYGS EVAHNFSGGT EHLTRYTDQW VMGAALDLQK LWGWKGGTFQ
ATVTDRNGRN LGSDANIGNN MLIQEVYGRG QTWHLTQFWL NQKLLDDRLE IKAGRVTVGE
DFFSFSCDFQ NLTFCGSQPG NLVGNYWVNW PTSQWGARAK LHTSAETYAQ VGVYQVNPNY
VDDEWARHNG WKLNNPGGTT GALIPLEFGW MPNIEGRPGT YRVGVWYNTS NGKDLYEDVN
GNPRGITGLD ARQHSGQYGV YLNLQQQVTG TAGGRGATVF LNFSQADRDT AQTDHQLSVG
VQYKGPFDRL SDTIGFAVGA THNNGRFADF VRQTNARTGA NTVVGDGYEY VSELYYSYSP
VPSVYFRPNL QYILHPGGTT QNKNAFVIGL KTGITF
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