Gene Rpic_4861 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_4861 
Symbol 
ID6285705 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010678 
Strand
Start bp1207797 
End bp1209275 
Gene Length1479 bp 
Protein Length492 aa 
Translation table11 
GC content66% 
IMG OID642619337 
Productprotease Do 
Protein accessionYP_001893372 
Protein GI187927027 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.837631 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCGTC AGACCCTGGC ACGCAGCGCG GCTGGCTTGG CCGCCGTGAT CGCCGTCGCG 
GGCGGCTATG CCTATCTGCA GAAGGATGTG ATTACCCGGG CGGTGGCTGC GCCCATCGCA
CCCGTCACCA CGCCGCAAAC CTCAATGGCA ACGCCTGCGG TGGCGGTGGC TGCGCCGATG
GACTTCTCCG GCATCGTCGA GCGCTATGGC CCGGCCGTGG TCAACATCAG CGTGACCGCG
CATGCGCAGC GCACGAGCAT GCAAGGTCTG CCGCCGGGCA TGAGCCCCGA TGACCCGTTT
GCCGATTTCT TCAAGCACTT CATGCCGCAG ATGCCGCAGC AGCGCGGCGA CCAGATCGTT
CGCGGGCTGG GCTCGGGCTT CATCGTGTCG TCCGATGGCC TCATCCTGAC CAATGCCCAC
GTGGTGGACG GCGCGCAGGA GGTCAACGTC AAGCTGACCG ACCGCCGCGA GTTCAAGGCC
AAGGTGCTCG GCGTGGACAA GCAATCCGAC GTGGCGGTGC TGCGCATCTC GGCCAAGAAC
CTCCCGGTGG TCCAGATCGG CAGCCCGGCC AATACCAAGG TGGGTGAGCC GGTGGTGGCC
ATCGGGTCGC CTTACGGGTT CGAGAACACC GTGACGGCGG GCATCGTCAG CGCCAAGTCG
CGCTCCTTGC CCGACGATAC CTATGTGCCG TTCATCCAGA CCGACGTGGC CGTCAACCCC
GGCAACTCGG GCGGGCCGCT GTTCAATCAG CACGGCGAGG TCATCGGGAT CAACTCCCAG
ATCTACAGCC AGACCGGCGG CTATCAGGGG CTGTCGTTCG CCATCCCGAT CGACGTTGCG
ATGAAGGTCG AACAGCAGCT CGTGGCCACC GGCAAGGTCA CGCGCGGGCG CCTTGGCATC
GCCGTGCAGG AGGTCGACCA GTCCCTGGCG GATTCCTTCA ATCTGCCCAA GCCGGAGGGC
GCGCTGGTCA ACTCTGTCGA GTCTGATGGT CCTGCCGCAA AGGCCGGCCT GCAGCCTGGC
GACGTGATCC TCCAGATCAA CGGGGCACGC ATCGACCGCT CGGGCGATCT GCCGGAACAG
GTGGCCGACA TCAAGCCGGG TACGACGGTG CCGCTGCAGA TCATGCGTCA GGGCAAGCCG
ACCACGCTGT CGGTGACTGT GGGCGCAGCC AAGGACGCCA AGGTGGCATC CAATGACAAG
GCGGCCCCCA ACCAGGGACG CCTGGGTCTG GCGGTGCGTC CGCTGCAACC CGACGAGAAG
CGTCAGAGCG GCCTGCCGGG CGGCCTGGTG GTGATGGAGG CGAGCGGTCC GTCAGCCAAG
GTCGGTATCC AGCCCGGCGA CGTGATCCTC TCGCTCAATG GCACGCCGGT GTCGTCGGTG
CAGGAGCTGC GAACGTTGGT CGAGCGCGCC GGCAAGCATG TCGCCCTGCT GGTGCAGCGT
GACGATACGA AGATTTTCGT GCCGGTGGAT CTGGGCTGA
 
Protein sequence
MTRQTLARSA AGLAAVIAVA GGYAYLQKDV ITRAVAAPIA PVTTPQTSMA TPAVAVAAPM 
DFSGIVERYG PAVVNISVTA HAQRTSMQGL PPGMSPDDPF ADFFKHFMPQ MPQQRGDQIV
RGLGSGFIVS SDGLILTNAH VVDGAQEVNV KLTDRREFKA KVLGVDKQSD VAVLRISAKN
LPVVQIGSPA NTKVGEPVVA IGSPYGFENT VTAGIVSAKS RSLPDDTYVP FIQTDVAVNP
GNSGGPLFNQ HGEVIGINSQ IYSQTGGYQG LSFAIPIDVA MKVEQQLVAT GKVTRGRLGI
AVQEVDQSLA DSFNLPKPEG ALVNSVESDG PAAKAGLQPG DVILQINGAR IDRSGDLPEQ
VADIKPGTTV PLQIMRQGKP TTLSVTVGAA KDAKVASNDK AAPNQGRLGL AVRPLQPDEK
RQSGLPGGLV VMEASGPSAK VGIQPGDVIL SLNGTPVSSV QELRTLVERA GKHVALLVQR
DDTKIFVPVD LG