Gene Rpic_4820 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_4820 
Symbol 
ID6285548 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010678 
Strand
Start bp1158888 
End bp1160150 
Gene Length1263 bp 
Protein Length420 aa 
Translation table11 
GC content65% 
IMG OID642619296 
Productbeta-lactamase 
Protein accessionYP_001893331 
Protein GI187926986 
COG category[V] Defense mechanisms 
COG ID[COG1680] Beta-lactamase class C and other penicillin binding proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.85681 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATATGA AACGTGGGCA GGCGCAGGGC ATGTCCCGCG ATCGGCTCGA TCGGGTCGGC 
CGTTTCATCG ACGATGCGTA CATCGCACCC GGCAAACTGC CGGGTGCCCT CGTCCAGGTC
TGGCGGCGTG GCGAGCGGGT GCTGAACGCC GTGCTCGGTC AGGCCGACCG CGAGCGCCAG
GTGCCGCTGA CCGAGGATGC GATCTTCCGC ATCTACTCGA TGACCAAGCC CATCACGTCG
GTCGCGTTCA TGATGCTGGT GGAGGAATGC AAGGTCGCAC TCGATGACCC CGTCAGCAAA
TTCATCCCGG CATGGCAAAA CCTGGGCGTG TATGCGGGCG GCTTCATGGA GAGCTTCCAG
ACGAGCCCGG CGGCGCGGCC GATGCGCATG GTCGACCTGC TGCGCCATAC CTCGGGCCTG
ACTTACGGCT TTCACCAGAA CACCAACATC GACGCGGCAT ATCGCCGGCT GAAACTCGGT
GACATCGCCA CCGCCGGTAC GCTCGACGAC ATGATCGACA AGCTCGCGGG CTTGCCGCTG
GAGTTCTCGC CCGGCGAGGC GTGGAACTAC TCCGTCTCCA CCGACGTGCT CGGCTATCTG
GTCGGCAAGA TCAGCGGCAT GCCGTTCGAG ACCTTCCTGA AGGAACGGAT ATTCGATCCG
CTGGGCATGG TCGATACGGC CTTCTACGTG CCGGAAGACA AGGCATCACG CCTGTGCGCC
TGCTACGCCG TCGGGTCGCT CGGCTCGAAG GTGGTGGCCG AGCGGCCGGC CTTGCAGGAC
GATCCGCGCA CCAGTGTCTA CCTCAAGCCG CCAAGCTTTG TTTCGGGCGG GGGCGGCCTC
GTGTCCACCG CAGCAGATTA CCTGCGCTTT GCTCGCATGC TGCTGCAAGG CGGTGAGCTC
GATGGCGTGC GCCTGCTGGG TCCGAAGACG CTGGAGCTGA TGACCGCCAA CCACCTGCCC
GGCGGGGCGG ACATCTCCAG CATGTCGCGG CACTCCATGT TCAGCGAAGC CGCTTACGAC
GGCGTCGGAT TCGGGCTCGG CTTTGCGACC ACGGTGGCAC AGCCCGCAAC GCTGATCCCG
GGCAGCACGG GCGATTTCTT CTGGGGCGGT GCGGCTGGCA CGTTCTTCTG GGTCGACCCA
CGGGAAGACC TGATCGGCCT GTTCCTGACG CAGGTGCTGC CGTCATCGGC GTACCCGGTA
CGCCGGCAAC TGCGTACGTT GGTCTACAGC GCGATCACGG AGTCGGAGGG GGGCGCGCGC
TGA
 
Protein sequence
MDMKRGQAQG MSRDRLDRVG RFIDDAYIAP GKLPGALVQV WRRGERVLNA VLGQADRERQ 
VPLTEDAIFR IYSMTKPITS VAFMMLVEEC KVALDDPVSK FIPAWQNLGV YAGGFMESFQ
TSPAARPMRM VDLLRHTSGL TYGFHQNTNI DAAYRRLKLG DIATAGTLDD MIDKLAGLPL
EFSPGEAWNY SVSTDVLGYL VGKISGMPFE TFLKERIFDP LGMVDTAFYV PEDKASRLCA
CYAVGSLGSK VVAERPALQD DPRTSVYLKP PSFVSGGGGL VSTAADYLRF ARMLLQGGEL
DGVRLLGPKT LELMTANHLP GGADISSMSR HSMFSEAAYD GVGFGLGFAT TVAQPATLIP
GSTGDFFWGG AAGTFFWVDP REDLIGLFLT QVLPSSAYPV RRQLRTLVYS AITESEGGAR