| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4799 |
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| Symbol | |
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| ID | 6285368 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010678 |
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| Strand | + |
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| Start bp | 1135305 |
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| End bp | 1137959 |
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| Gene Length | 2655 bp |
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| Protein Length | 884 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642619275 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001893310 |
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| Protein GI | 187926965 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.198228 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.368629 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGACG AACTTTCCTA CCCGCTGTCG GCGCAAAGCC TGCCTGTGCC CCTCTATGTC
GTTCTCGAGG GCCGCATCGT GTACGCCAAT GCGGCGGGCG TTTGCATTGT GCGCGCGCGC
TCTGCAGACG AGCTGCTGGG AGAACCCTTC TCGCGCTTCT TTCTGGATGC GCCGACCTCG
CCTGCCGCGC CCGGCACCGT CGAAGCTCAT GCCATCGCGC CGGAAGTCGC GGCCACACCG
GCGGCACGGC TGGCCTCCGT CAGGTCTCCT GAGGCGTCCA CTGAACCGGT GACCGTTCGG
CTGACTGTGA CGCCCACCCG CTTCGATGGT CTGCCCGCAC AACAGGTTGT CGTCCATGGG
CTGCCCATGC CGCTCGATGC GCAACTGCCG GGCAAGCCGG CCGAGCGCGT CCTGAGTGCA
GAAGCCATCG GGGCGGCGCT ACCGCACGAA CATCTGGACC ATCTTTTGTC CACGTTGCCA
TCAGCGGCGT CGCTTGGCGA GCGGCTGCAT GCCGTGCTGC GCGCGCTTGA GGCGGCACTA
CCGGACGTAC TGTGCGTGGT GGTGCGCGTC GTTTCCGGGC GAGCGAGGCT CTACGGCACG
CAGGGTGCGC GCGTGCAACT TGCACGCCGT GGAGAAGCAA CCGCGCCCGA GGTCGATATC
GAACTTGCTC GCGTCGCGCC GCTGCTGGGC GCGCTGGCGC CCATCGAACT GATCCGCCTG
TCCAATGCAC CAACCGCCCT GCGTGAGACG CTCACGTGCG CGCTGGGCAT CGCGCTGCCC
GCGTGGCTGT GCCGCATTCC GGCGCAGCCA CGCGACATGT CGATGGGCGA CGATCTGCTA
TGCCTGTTCT ATGCCGCGCC CGCGCGCCTC ACGCCCGACG ACGCTATCCT GCGCAGCGCA
TGCGCCCACT ACACCAGCGC CCTGGTCAAG CTCCTGCGCC TGGAGAGCGA ATACCGCCAG
GCGCGCGACT TGCGCGATCA GTACCGGCTG GTCGTCAATC ACCTGAGCGA GGGTGTGCTC
ACGCTTTCCA CTGACGGGCG CGTGCTCTCA TACAACCGCA GCGCGGCGCA GATCCTCCAC
CTCACAGGCA CATCTTGGAA GGGCCGCCCA CGCATGTCCC TGAGCGACAT GGTCTTTGGC
GAAGACGGTG CAATCCTGCC TCGCGCGGCA TGGCCAACCA CGCTGGCTGC ACGGACCGGA
CGGGCCATCA GCAATGTCGT CGTCGGCGTG CCTGCCGGTA ACGGGCAGAT CGTCTGGCTG
CGCGAGTCGG TCCTGCCGAT GTTCTCGCCC GACAGCGCCT CGCCGCATGC GGTGCTGGTC
ATCTTCACCG ACATCACCGC CGAACGCTCG ACCTACGAAC AGCTGCGCCT GCTGGAAACC
AAGGACTCGC TGACCGGCCT TCCCAATCGC GCTGCTTTCA TCGAGCGGCT CGATGCGCGC
CTGGCACTGC CCTCGACCGG CCAGTCGGCG CTGCTATATG TCGGGCTGGA TCACTTCAAG
ACGGTCAATG AGGCAATGGG CCACCATATC GGCAATCAAG TGCTGAATGT GGCGGCACAA
CGCATCCGCG CGGAGGCAGG GCAGCGCGCG CTGGTGGCGC GGCTGGGCGG CGACCAGTTC
AGCGTGGCGA TCGACGATCC CGATGCGGCG GACGCGCTCG CCCTGCAGGT GCTCGGCGCG
CTGGCCAAAC CGTTTGCCGG CGGCGAGCGC GAAGTCCACC TGTCGGCCAG CATCGGCATC
GCGGTGTTTC CGGAAGACGG CGGCGACGCC TCCACGCTCG TCAGCCGTGC CGAAGCCGCC
ATGTATCGCG CCAAGGAGAA CGGCCGCAAC CGCGTCACGC GGTACTCGCG CGCGCTGGAA
ACACAGATAC TGCGCCGCTT CACCCTGAAC GAGCGCATGC GCCGCGCACT CGCGCGCGGT
CAGGTGAGGC TGGTCTATCA GCCCAAGTAC GCGCTGGCTT CGGGCGAACT CGTGGCGGTG
GAAGCGCTCA TGCGCTGGTC GGACCCGGAA CTGGGCGCCG TCTCGCCCAC CGAGTTCATC
GCCGTGGCGG AGGAGTCGGG CTATATCCTC GAACTGGGCC GCTGGGCACT GATGCAGGCA
TGCGCGAGGG GCCAGGCGTG GGAGCGCAAT TTTGGCTTCA CGGGACGCAT CTCGGTCAAT
GTCTCGGCCC GGCAGTGCGA TGCCGGCGTC ATCGAGCGCG ACGTGGACGA GGCTCTCAAG
GCATCGGGAC TGACGCCTTC GCGGCTGGAA CTGGAGTTGA CGGAAAGCGT GCTGCTGGCT
GATCGCCTCT CGACGCAGCG GCTGTTGACA AGCCTTGCGG CACGCGGCGT GCGCATCTCG
CTCGACGATT TCGGCATCGG CTTCTCGTCA TTGTCGTACC TGCGCAGCCT GCCGATCCAT
AACATCAAGA TCGACCGCTC GTTCATCAGC GGCGTGCCGG CGGTGGCCGA CTGCGTGGTG
CTCACCAAGA CCATCATCGC AATGGCTCGG GCGCTGAACA TGACTGTGAC GGCCGAGGGG
GTGGAGACAC CAGAGCAATC GGCGTTTCTT GCCGCGCATG CGTGCGACGA AGTCCAGGGC
TTCCTGTTTG GCCGGCCGCT GGAAGTGCCG GCGCTCGAAA GTCTGCTGCG CACTCACAGC
CGCGCACAGG CATAA
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| Protein sequence | MQDELSYPLS AQSLPVPLYV VLEGRIVYAN AAGVCIVRAR SADELLGEPF SRFFLDAPTS
PAAPGTVEAH AIAPEVAATP AARLASVRSP EASTEPVTVR LTVTPTRFDG LPAQQVVVHG
LPMPLDAQLP GKPAERVLSA EAIGAALPHE HLDHLLSTLP SAASLGERLH AVLRALEAAL
PDVLCVVVRV VSGRARLYGT QGARVQLARR GEATAPEVDI ELARVAPLLG ALAPIELIRL
SNAPTALRET LTCALGIALP AWLCRIPAQP RDMSMGDDLL CLFYAAPARL TPDDAILRSA
CAHYTSALVK LLRLESEYRQ ARDLRDQYRL VVNHLSEGVL TLSTDGRVLS YNRSAAQILH
LTGTSWKGRP RMSLSDMVFG EDGAILPRAA WPTTLAARTG RAISNVVVGV PAGNGQIVWL
RESVLPMFSP DSASPHAVLV IFTDITAERS TYEQLRLLET KDSLTGLPNR AAFIERLDAR
LALPSTGQSA LLYVGLDHFK TVNEAMGHHI GNQVLNVAAQ RIRAEAGQRA LVARLGGDQF
SVAIDDPDAA DALALQVLGA LAKPFAGGER EVHLSASIGI AVFPEDGGDA STLVSRAEAA
MYRAKENGRN RVTRYSRALE TQILRRFTLN ERMRRALARG QVRLVYQPKY ALASGELVAV
EALMRWSDPE LGAVSPTEFI AVAEESGYIL ELGRWALMQA CARGQAWERN FGFTGRISVN
VSARQCDAGV IERDVDEALK ASGLTPSRLE LELTESVLLA DRLSTQRLLT SLAARGVRIS
LDDFGIGFSS LSYLRSLPIH NIKIDRSFIS GVPAVADCVV LTKTIIAMAR ALNMTVTAEG
VETPEQSAFL AAHACDEVQG FLFGRPLEVP ALESLLRTHS RAQA
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