| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4699 |
|---|
| Symbol | |
|---|
| ID | 6285097 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010678 |
|---|
| Strand | - |
|---|
| Start bp | 1042280 |
|---|
| End bp | 1043536 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642619176 |
|---|
| Product | Extracellular ligand-binding receptor |
|---|
| Protein accession | YP_001893211 |
|---|
| Protein GI | 187926866 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.143461 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.00661341 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGCAT TTCGAGTTGC GCTGCGCGCG GCGGCCGTGG CAGGCGCGGT AGCGGGCGCA
TTCTGCGTGG GCAATGTTCA CGCCGAGACC GTCAAGATCG CCTGGATCGA TCCGCTGTCG
GGGCTGATGG GCGCGCTGGG CCAGAACCAG TTGCGCAGCT GGCAATACGC GGCCGAGCTG
GCCAATCAGC AGAACTGGAG CGGCAACGGC ACCAAATTTG AAGTCGTCGG GTTCGACAAC
AAGGTCTCGC CGCAGGAAAG CCTGACGATC CTCCGGCAGA TTACCGACCA GGGCATCCGC
TACATCGCGC AGGGGGATGG CTCCAGCGTG GGCATGGCGC TGCAGGACGC CGTCGCAAAG
TACAACGACC GCAACCCGGG CAAGGAAATC GTCTATCTGA ACTACGCGGC CGTCGATCCG
GACATGACGA ACAGCAAGTG CAACTACTGG CACTTCCGCC TGGATGCCAA CTCCGACATG
AAGATGGAGG CCCTGACGAG CTATCTCGCC AAGGACCAGA ACATCAAGAA GGTCTATCTG
CTGAACCAGA ACTATTCGTT CGGCCACCAG GTGGCGCGCG CGGCCAAGGA ATACCTGAAG
CGCAAGCGCC CGGACATCCA GGTCGTGGGC GAAGATCTGC ACCCGCTGGC GCAGGTGAAG
GACTTCTCGC CATACGTTGC GAAGATCCGC GCGTCGGGCG CCGATACGGT CATCACCGGC
AACTGGGGAA GCGACCTCGC GTTGCTGATC CGTGCAGCCA AGGACGCGGG CCTGAACACG
AACTTCTACA CGTACTACGC CGGCACCACG GGCGTGCCGA CGGCAATGGG CGCATCGGGC
GCGGACCGCG TGAAGGTCAT CAGCTATTTC GCGCCCAATG ATGGCAATCC GAAGACCAGC
GCCGTGCTCG ACGGCTTCAA GAAGAAGTAC AACGACGACT TCTTCAATGC CGACGTCTAC
ACCGGTATCG CCTTCCTGGC CAAGGCTGTC AAGACGACGG GTTCCGCCGA TCCCGCCAAG
GTCGCCAAGG CCATGGAGGG CATGACGGTC GAAAGCCTGA ACGGTCCGGT CGAGATGCGC
AAGACCGACC ATCAGGCCCA GCAGACGCTC TACGTCACCA CCTGGGTCAA GGCCGATGGC
AAGAAGATCA AGTACGACCA GGAAAACACT GGCTACGGCT GGCGTACCGA TGTCACGCTC
GAGCCGCATC TGGGCGCGCA GCCGACGTCG TGCCAGATGA AGCGCCCGGC GTCGTGA
|
|---|
| Protein sequence | MKAFRVALRA AAVAGAVAGA FCVGNVHAET VKIAWIDPLS GLMGALGQNQ LRSWQYAAEL
ANQQNWSGNG TKFEVVGFDN KVSPQESLTI LRQITDQGIR YIAQGDGSSV GMALQDAVAK
YNDRNPGKEI VYLNYAAVDP DMTNSKCNYW HFRLDANSDM KMEALTSYLA KDQNIKKVYL
LNQNYSFGHQ VARAAKEYLK RKRPDIQVVG EDLHPLAQVK DFSPYVAKIR ASGADTVITG
NWGSDLALLI RAAKDAGLNT NFYTYYAGTT GVPTAMGASG ADRVKVISYF APNDGNPKTS
AVLDGFKKKY NDDFFNADVY TGIAFLAKAV KTTGSADPAK VAKAMEGMTV ESLNGPVEMR
KTDHQAQQTL YVTTWVKADG KKIKYDQENT GYGWRTDVTL EPHLGAQPTS CQMKRPAS
|
|---|
| |