| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4689 |
|---|
| Symbol | |
|---|
| ID | 6285058 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010678 |
|---|
| Strand | + |
|---|
| Start bp | 1028157 |
|---|
| End bp | 1029281 |
|---|
| Gene Length | 1125 bp |
|---|
| Protein Length | 374 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642619166 |
|---|
| Product | MscS Mechanosensitive ion channel |
|---|
| Protein accession | YP_001893201 |
|---|
| Protein GI | 187926856 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.106899 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGTGGC TCAACGCCCA CACCTTCCTG CGCGTTCCCG CCCGCGACTG GGCTGCGGCC
GCGCTCACCG TCGTGGCGGC TTATGCCCTG CTGTCGAGCA TCCTGCGGCT GATCTGCAAT
CGGCTTGAAG CACACGCCCG CGACACCGGC CACCGCTTCG ACGCCCTGAC CGCCGCGGTA
CTGCGCGACA CGCATCCGCT GTTCATCGGG CTCGCAGCAT TGCTGGCGGG GTCCTACTTC
ATCGATCTGC CGAACCGGAT TGCCAACAAG CTCGATCACG TGTGGTTCGT CATCATTGGC
TTCCAGATTG CGCTGTGGCT CAATCGTGGC GTGAAGCTCT GGGCGCGGGA GCGGCTGTCC
GCGCAGAGCA ACGCCACCCG CAATCCGGTC ATCACGTCAA TGGTGGCCTG GGTCCTGCGC
TTTGCGCTGT GGTCGATGCT GATGCTCGGC ATCCTGGCCA ATGTGGGCGT GAACATCACG
GCCTTTGTCG CCAGCCTGGG CGTGGGCGGT GTCGCCGTTG CGCTCGCGGT GCAGAACGTG
CTGAGCGACC TCTTTGCCTC GCTGGCCATC GGGCTCGACA AGCCCTTCGA AATTGGCGAC
TTCATCGTGG TCGAATCGAT TGCCGGCACG GTACAGCACG TCGGTCTCAA GACCACGCGC
ATTCGCAGCC TGTCGGGCGA GGAAATCGTC ACGTCCAACA CGGCGCTGCT CAAGAGCACG
ATCCACAATT ACAAGCGAAT GTCGGAACGG CGCATCGTCT TCACCTTCGG GGTGACGTAC
GACGCGCGTG CGGCACAGCT GCAGAAGATT CCAGAGATCG TGCGCCGCGC CGTAGAGGCC
GCCGGCAACA CGCGCTTCGA TCGCGCGCAT TTCAAGGAGT TTGGTGAGAA TGCGCTGAAC
TTCGAAGTGG TCTATTTCGT GACCGATCCG GATTTCAATC TTTACATGGA CATCCAGCAG
CGCATCAACC TGTCCATCCT AGAAGGCCTG GAGAACCTGG GCACTGCGTT CGCGCTGCCC
ACGCGCACCA TCCAGCTCGT GCGCCGGGAT GGTGAACCCG TGGAGCCCGA AGACCTGGGC
GGCCATGCAG CTTCAGGCGG TGCGCCGCGC ATGCGCACGC GTTAG
|
|---|
| Protein sequence | MEWLNAHTFL RVPARDWAAA ALTVVAAYAL LSSILRLICN RLEAHARDTG HRFDALTAAV
LRDTHPLFIG LAALLAGSYF IDLPNRIANK LDHVWFVIIG FQIALWLNRG VKLWARERLS
AQSNATRNPV ITSMVAWVLR FALWSMLMLG ILANVGVNIT AFVASLGVGG VAVALAVQNV
LSDLFASLAI GLDKPFEIGD FIVVESIAGT VQHVGLKTTR IRSLSGEEIV TSNTALLKST
IHNYKRMSER RIVFTFGVTY DARAAQLQKI PEIVRRAVEA AGNTRFDRAH FKEFGENALN
FEVVYFVTDP DFNLYMDIQQ RINLSILEGL ENLGTAFALP TRTIQLVRRD GEPVEPEDLG
GHAASGGAPR MRTR
|
|---|
| |