| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4679 |
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| Symbol | |
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| ID | 6285026 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010678 |
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| Strand | - |
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| Start bp | 1013251 |
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| End bp | 1014723 |
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| Gene Length | 1473 bp |
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| Protein Length | 490 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642619156 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001893191 |
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| Protein GI | 187926846 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.882516 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATCCG CGTCCGATAG CGTCAGCAGC CCTGCTGCCC TGGGAGTCGA CCTGATCGAC
TTCTTCGATG TCACCCCCAC CTCGCTTTGG CTGGAGGATT ACAGCGACCT GCACCGACTG
TTCGCCCAAT GGCGCACGGC GGGGGTGACC GACCTGCAGC GCTTTCTGGA AGAGGACGTA
TCACGTGTGG CGGCGTGCTC GGCCTGCATC AAGGTCCTGC GCGTCAACCG TCGCACGCTG
GCCATGTATG CCGCCCAGGA TGCCGAAACC CTCACTGCGC GTCTGGCCGA CGTGCTGCGC
GACGACATGC TCGAAGCCCA CGTGGGCGAG CTTGTACAGC TCTGGTCGGG CAGCCCCTCG
TTTGAAAGCC GCAGCGTGAA TTACACGCTC GACGGCCGCC GACTCGATAT CCTGCTCAAG
GGCGTACTGC TGCCCGATCA TCACCAGCCG TGGGACCGCG TGCTCGTGGC CGTCGACGAC
ATCACCGAAC TGGAGGACGC CCGCCGTCGT GCCGCCGGCA GCCAGCTCTA TGCGCGAGGC
GTGTTTGAGC ACGCGCCGGT GTCGCTGTGG GTCGAGAACT TCAGCACGAT CAAGATGCTG
CTGGACGAGG TCCGCATGCA GGGAATCTCC GATTTCCGCA CGTTCACTGA CGTGCATCCG
GAGTTTGTCG AGCGCTGCAT GCAGGAGATC CAGGTGCTCG ACGTCAACGG CTTCACGCTG
GAGATGTTCA AGGCGCGCAG CCGCAGCGAT CTGCTCGGCC GCCTGTCCGA AGTCTTTCGG
GACGACATGC GTTCACACTT CCGCGAGCAG CTGATCGACC TGTGGGACGG CAGGCTGTTC
CAGCAGCGGG AGGTCGTCAA CTACGCACTG GACGGTAATC CGCTGAACAT CCACCTGCAG
TTTTCCGTCT TTCCCGGCCG CGAGCAGGAC TGGGACATGG TGCTGCTGGC ATTGACGGAC
ATCACCGCGC GCAAGAAGGC CGAGTCCTAC CTGGAATATC TCGGCAAGCA TGACGTGCTG
ACAAAGCTGA AGAACCGGTC TTTCTACGTG GACGAAGTCA ACCGGCTCGA GCGCAAGGGG
CCGTTCCCGG TCACGGTGAT CATGATCGAC CTGAACGATC TGAAAACCGT CAACGACCAA
CTGGGCCACG CGGCGGGGGA TGCGCTGCTG CGGCGCGCGG GTGAAGTGCT CGCCAAGGCC
ATCGACAAGC CTGCCCATGC CGCCCGCATC GGTGGTGACG AATTTGCCGT GCTGATGCCG
GGCGCCGATG CGCAGGATGG CGAAGCGCTG ATGGAAAGCC TGCGCAAGCT GGTGGAACTC
AATAACCAGT TCTATTCGGG GCCGTCGCTC GGCTTCGCGA TGGGTTGCGC CACATGCCAG
GAAGGCGAGC GTCTTGAAGA GGCATTGCGC GAGGCCGACG TCGCCATGTA CGAAGACAAG
CGCACGCAGC AGGTCGGTGT GCGCGCGGCA TAG
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| Protein sequence | MQSASDSVSS PAALGVDLID FFDVTPTSLW LEDYSDLHRL FAQWRTAGVT DLQRFLEEDV
SRVAACSACI KVLRVNRRTL AMYAAQDAET LTARLADVLR DDMLEAHVGE LVQLWSGSPS
FESRSVNYTL DGRRLDILLK GVLLPDHHQP WDRVLVAVDD ITELEDARRR AAGSQLYARG
VFEHAPVSLW VENFSTIKML LDEVRMQGIS DFRTFTDVHP EFVERCMQEI QVLDVNGFTL
EMFKARSRSD LLGRLSEVFR DDMRSHFREQ LIDLWDGRLF QQREVVNYAL DGNPLNIHLQ
FSVFPGREQD WDMVLLALTD ITARKKAESY LEYLGKHDVL TKLKNRSFYV DEVNRLERKG
PFPVTVIMID LNDLKTVNDQ LGHAAGDALL RRAGEVLAKA IDKPAHAARI GGDEFAVLMP
GADAQDGEAL MESLRKLVEL NNQFYSGPSL GFAMGCATCQ EGERLEEALR EADVAMYEDK
RTQQVGVRAA
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