| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4640 |
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| Symbol | |
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| ID | 6285912 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010678 |
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| Strand | + |
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| Start bp | 966863 |
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| End bp | 968557 |
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| Gene Length | 1695 bp |
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| Protein Length | 564 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642619117 |
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| Product | putative sigma54 specific transcriptional regulator |
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| Protein accession | YP_001893152 |
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| Protein GI | 187926807 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.277441 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGAAGCCA AGCTCAACTA CCCCTCGGAC GCCGACCTGC GGCGCCTGCT GCGTTTCGAC
CCCGAGAGCG GCACCATCTG GCTGGGCGAG CGACGCATGC TGTTGCTGCA TACCGCCGCG
CTGAGCGGTC TGCGGCAGGA CCTGATCAAC TCGGTGGGCC CGGTCCATGC GCGCCGCTTG
CTGACCCGCA TGGGCTACGC CTCTGGCCGC CGCGACGCCG AATTCGCACG CAAGACCCGC
GGCGCGCTCT CACTCGATGC CGCCTTCATG GTCGGCCCGC AGTTGCACAT GCTCGAAGGG
GCGGTGCGTG TCACGCCCAT ACAACTGGAC TTCGACCCGG CGAGCGGACG CTTCCATGGC
GAGTTCCGCT GGGACAACTC ATGGGAAGCA CACGCCCACC GCCAGGCATT TGGCCTTGTA
GACGAACCTG CCTGCTGGAT CCAGCTCGGC TATGCCAGTG GCTATACCAG CGCGTTCATG
GGCCGCCTCA TCCTCTTCAA GGAAACCCAC TGTGCTGCCT GCGGCGCCGA TCACTGCGAG
ATCGTCGGCA AGCCGATCGA CGAATGGCCC GACGGCGACG AACAACGGCA GTACTTTGAA
GATGAGTCTC TGCTCGACAC GATTGCAGCG CTCAACGAAC AGGTGCAGGC GCTCAAGACC
ACGATCGAAT CGACCTGCGA GCCCAATGTG GCCGCCGGCA TGCTGGTCGG CCGGTCGCCC
GCGTTCCAGC GCGCCCACGA ACTGCTCAAC CGTGCGGCCG CCACGCAGGT CACGGTGCTG
CTCACCGGCG AGACCGGCGT GGGCAAGGAG CGCTTTGCGC GCGCCCTGCA TCAGGGGTCG
GCCCGCGCGG CCGGCCCCTT CGTGGCCGTC AACTGCGCGG CGCTGCCCGC CGACCTGATC
GAAGCCGAGC TGTTTGGCGT CGAACGCGGC GCCTACACGG GCGCCCATGC GGCGCGCAGC
GGCCGCTTCG AGCGGGCGGA TGGCGGCACG CTCTTTCTCG ATGAAGTGGG CGACCTGCCG
CTGCCCGCTC AGGCCAAGTT GCTACGCGTG CTGCAAGAAG GGGAAATCGA ACGCCTGGGC
GCGGAAACCA CGCGCAAGGT CAACGTGCGT CTTGTGGCCG CCACCAACGT CGACCTGGAA
GCCGCGGTGG CCCAGGGGCG GTTTCGTCGG GACCTGCTGT ATCGGCTGAA CGTCTATCCG
ATCTGCATTC CGCCGCTGCG TGAACGCACG ACCGATATCG AGCCGCTGGC CAATCACCTG
CTGGCCCGAT TCACGGCCTT GCACCAGAAG CGCCTGGCAG GCTTTGGCGA GCGCGCCATG
CAGGCGCTCG TGCACCACGA CTGGCCCGGC AACGTGCGCG AGCTGGAGAA CCTGGTGGAG
CGCGGCGTCA TCCTCGCCCC GCAGGGCGAG AACATCGAGA TCGAACACCT CTTTCCGAAC
CAGCCCACGG GTGTGCAATC CCAGTTGAGC GCGCAGGGCC GTCTGGCGCC GGTGCGCCTG
GAAAGCGAGC AGGCGCTGTG CACACGCATC CTGGACAGCG GCCTGAGCCT GGAAGCGCTG
GAAACGCAAT TGCTCGACCT GGCCGTCGAG CGTGCCAAGG GCAACCTTTC CGGCGCCGCA
CGCCAGCTTG GCCTGACCCG GCCGCAACTG GCCTACCGCC TCAAGCGCCA TCTAGACAGG
GGCAGCGAAG AATGA
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| Protein sequence | MEAKLNYPSD ADLRRLLRFD PESGTIWLGE RRMLLLHTAA LSGLRQDLIN SVGPVHARRL
LTRMGYASGR RDAEFARKTR GALSLDAAFM VGPQLHMLEG AVRVTPIQLD FDPASGRFHG
EFRWDNSWEA HAHRQAFGLV DEPACWIQLG YASGYTSAFM GRLILFKETH CAACGADHCE
IVGKPIDEWP DGDEQRQYFE DESLLDTIAA LNEQVQALKT TIESTCEPNV AAGMLVGRSP
AFQRAHELLN RAAATQVTVL LTGETGVGKE RFARALHQGS ARAAGPFVAV NCAALPADLI
EAELFGVERG AYTGAHAARS GRFERADGGT LFLDEVGDLP LPAQAKLLRV LQEGEIERLG
AETTRKVNVR LVAATNVDLE AAVAQGRFRR DLLYRLNVYP ICIPPLRERT TDIEPLANHL
LARFTALHQK RLAGFGERAM QALVHHDWPG NVRELENLVE RGVILAPQGE NIEIEHLFPN
QPTGVQSQLS AQGRLAPVRL ESEQALCTRI LDSGLSLEAL ETQLLDLAVE RAKGNLSGAA
RQLGLTRPQL AYRLKRHLDR GSEE
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