Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_4638 |
Symbol | |
ID | 6285955 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010678 |
Strand | + |
Start bp | 963199 |
End bp | 964977 |
Gene Length | 1779 bp |
Protein Length | 592 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642619115 |
Product | putative sigma54 specific transcriptional regulator |
Protein accession | YP_001893150 |
Protein GI | 187926805 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.335351 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAAAAC GGCATCCGCG AAAACCCAAG CCCGACGCGA CGGCACCTGC ACGCCCCCAT CGCGACACGA AACATACGGG CGCCACCGAG ATCCGCGTCC CGGCCATCCA CGACCTCGCC AAACGCTTGC GCTTCGCGCC GCAGCAGGGC CGGATCTGGC TGGACGACCA GCGCATGATG CTCATGCACA TCAGCTCGCT CGGCGCGCTG CGGCAGGAGC TGATCGAAAG CCTGGGCAAG GAAACGGCAC GCGGGCTGAT CACCCGCATC GGCTATCAGG CCGGCACGCA CGATGCCGCC ATGTCGCGCA AGGTGCGCGC CGGCTTCAGC AGCTACGACG ATTTCCTGGC GGGGCCGCAA CTCGTGTCGC TCGAGGGCAT GGTCCATTGC GAGCCGGTCG CACTGGATAT CGACGTGCAG CGTGGCCGCT ATTTTGGTGA CTTCTACCTG ATCGACAGTT CCGAGGCGGA GGCCCACATC GCCAGCTACG GCATCGGCAA CGAGGCGGTG TGCTGGATGC TGATCGGCTA TGCGTGCGGA TACACCAGCG CCTTCATGGG CCGCCCCATC CTCTGGCGCG AGATCGAATG TCGCGGCATG GGGCATGCGA AATGCCGCGT GGTGGGCAAA CCCGTTGAAG AATGGGAAGA CGCCGAGGAC GACCTGCGCT TCCTGCAGAT CGGCGATTTC GTCAAATGGG CGCCGCAACC CGAGGCCGCG CTGCCGGCCA CGAGCCGGAT CGCCGCGCGG CTGTCGAACG CACCGGAAAA CAGCTTCGGC GTGGTGGGAA TCTCCGCCGG TTTCAACACC GTCTGCCATA TGGTCAACAA GGTGGCCCCC ACCGAAGCGA CCGTGCTGTT CCTGGGCGAG AGCGGCGTCG GCAAGGAGGT CTTCGCCAAC AATCTGCATC GCCTGAGCAA GCGCGCAGAT GGGCCATTCG TCGCCGTCAA CTGCGCGTCG ATTCCCGAGC ACCTGATGGA ATCGGAATTG TTTGGCGTGG AGCGCGGCGG TTTCACGGGC GCAACCACGT CACGGCCCGG GCGCTTCGAG CGCGCCGACG GCGGCACGCT CTTCCTCGAC GAGATCGGCA CGCTCAGCCT GACCGCACAG GGCAAGCTCT TGCGCGCCCT GCAGCAGGGC GAAATCGAGC GCGTGGGCGA TACCCGCACG CGCAAGGTGA ACGTGCGGGT GATTGCCGCG ACCAACGTGA ACCTGCGCGA AGCCGCCAAG GCGGGCCAGT TTCGCGAAGA CCTGTTCTTC CGGCTGAACG TGTTTCCGAT CCAGGTCCCG CCGCTGCGCG AGCGGCGCGA CGACATCCCG TTGATGATGA ACTGGTTCCT GCAGCGCATG GCCAAGAAGC ACGACAAGCA GATCACCGGC TTTCGCGAAC GGGCCGTCGA CGCGCTGTTC GCCTACGACT GGCCGGGCAA TGTGCGCGAG CTGGAGAACA TGATCGAACG CGCCGTGATC CTGGCCGAAG ATGGCGGCGC ACTGGACCTG TGTCATCTGT TCACCAGCGG TGAGGAGATC GACACCGCCT CGTTCATCCT CAAGCGCAGC GGCAATATCG GCCAGAGCAG TGACACGGTG GAAGACGTGG CCTCTTCCAC CACCGCCATT CCACGTCCGG GCCTGGCCGA GACCGAGGTG GCGATGCTGC GTGCCGCGGT GATCGAGGCC AACGGCAATC TGTCGCGCGC GGCACGGGTG CTCGGCATCA GCCGCCCGAC GCTGGCCTAC CGGCTGCGCA AGTATCAGAT TCCAGTCGAT GGAAGCTGA
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Protein sequence | MAKRHPRKPK PDATAPARPH RDTKHTGATE IRVPAIHDLA KRLRFAPQQG RIWLDDQRMM LMHISSLGAL RQELIESLGK ETARGLITRI GYQAGTHDAA MSRKVRAGFS SYDDFLAGPQ LVSLEGMVHC EPVALDIDVQ RGRYFGDFYL IDSSEAEAHI ASYGIGNEAV CWMLIGYACG YTSAFMGRPI LWREIECRGM GHAKCRVVGK PVEEWEDAED DLRFLQIGDF VKWAPQPEAA LPATSRIAAR LSNAPENSFG VVGISAGFNT VCHMVNKVAP TEATVLFLGE SGVGKEVFAN NLHRLSKRAD GPFVAVNCAS IPEHLMESEL FGVERGGFTG ATTSRPGRFE RADGGTLFLD EIGTLSLTAQ GKLLRALQQG EIERVGDTRT RKVNVRVIAA TNVNLREAAK AGQFREDLFF RLNVFPIQVP PLRERRDDIP LMMNWFLQRM AKKHDKQITG FRERAVDALF AYDWPGNVRE LENMIERAVI LAEDGGALDL CHLFTSGEEI DTASFILKRS GNIGQSSDTV EDVASSTTAI PRPGLAETEV AMLRAAVIEA NGNLSRAARV LGISRPTLAY RLRKYQIPVD GS
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