| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4562 |
|---|
| Symbol | |
|---|
| ID | 6285929 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010678 |
|---|
| Strand | + |
|---|
| Start bp | 895854 |
|---|
| End bp | 896477 |
|---|
| Gene Length | 624 bp |
|---|
| Protein Length | 207 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642619042 |
|---|
| Product | transcriptional regulator, TetR family |
|---|
| Protein accession | YP_001893078 |
|---|
| Protein GI | 187926733 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.602927 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCGCG TCAAGAATGA AGACGAATTC GAGCTGCGCC GCGAAAGCGT GCTCGACACC
GCTGCCGAGG CCTTTGCGGC CGACAGCTAC CCGAGCGTGT CGATGAACCA GCTTGCTGCC
GCCTGTGGCG GCTCGAAGTC GCGCCTGTAT CACTACTACG AGGGCAAGGA GGCCATCCTG
TTCGATCTGC TCGACCGCTA CACCAAGCGG CTGGCCGATC TCGTCGAGCG CGCGGAGCGC
GACGCGCGCC ACGCCAGGCT CTCGGCCCGG GCTACGCTGC ACCTGTTGAT CCGCACGTTT
CTTGCGGAAT ACGCGACCTC GCGCACGCGA CACGTGGCCC TGCTCAATGA TGTGAAGTAC
CTGTCGCCGG ATCAGCGCGA CATCGTGCTT GCGCGCGAGC GCGATGTGGT GGCGGCCGTG
GGACAGCAGC TCGGTGCGGC TTACCCTGAC AAGGTGGACG ACGCCAACCG CACGCCCGTC
ACGATGATGC TGTTCGGCAT GATGAACTGG ACGTTCACCT GGCTCAAACC CGACGGACCG
CTCTCCTATG AGGGTTATGC CGAGATGGTG ATCGACATGC TGGAGAACGG CCTTGGCCGG
GGAGCCGCTC AGCGATCGTC ATAG
|
|---|
| Protein sequence | MSRVKNEDEF ELRRESVLDT AAEAFAADSY PSVSMNQLAA ACGGSKSRLY HYYEGKEAIL
FDLLDRYTKR LADLVERAER DARHARLSAR ATLHLLIRTF LAEYATSRTR HVALLNDVKY
LSPDQRDIVL ARERDVVAAV GQQLGAAYPD KVDDANRTPV TMMLFGMMNW TFTWLKPDGP
LSYEGYAEMV IDMLENGLGR GAAQRSS
|
|---|
| |