| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4409 |
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| Symbol | |
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| ID | 6286028 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010678 |
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| Strand | - |
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| Start bp | 716538 |
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| End bp | 717131 |
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| Gene Length | 594 bp |
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| Protein Length | 197 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642618889 |
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| Product | Rhomboid family protein |
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| Protein accession | YP_001892930 |
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| Protein GI | 187926585 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.824835 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATCAAGC TGCTCATCCT CATCAACGTG GCGGCGTTCG TTGCAGAAGT CTTTGCGGGG
GACGCGTTGC TACGAACCTT TGCGCTCTGG CCACTCGGCG TATCTGGCGG CGGCGTGGTG
GGAGGATTCC TGCCGTGGCA GCCGCTGACA TACGCTTTCC TGCACGCAAA TGGCGCGCAT
CTGGCGTTCA ACATGTTCGG CCTCTACCTG TTCGGGCGCG ACGTCGAACG TACCGTGGGT
GCGCCTCGGA CTTGGCAGCT CTATCTGTCC AGCATCTTGA GTGCAGCCTT CGCGCAACTC
GCTTTTACGG CCTTGAGCAT TCTTCCGGCG GGGCCGGTCA TTGGCGCGTC CGGGGGCGTA
TTCGGACTGC TTCTCGCGTA TGCCGTCCTG TTTCCCAATC GCATCATCGT TCCGTTGATC
CCGCCCATCC CGATGCCGGC GTGGGTGTTC GCGACGCTCT ATGCGATTGT GGAGCTGACC
CTCGGCGTGA GCGGCACCGA AGTCAATGTT GCGCACTTTG CGCATCTGGG CGGCATGGCG
GGCAGCGGGG TGCTGCTTTG GCACTGGCTG CACGGCACCC CACGCGAGTC ATAG
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| Protein sequence | MIKLLILINV AAFVAEVFAG DALLRTFALW PLGVSGGGVV GGFLPWQPLT YAFLHANGAH
LAFNMFGLYL FGRDVERTVG APRTWQLYLS SILSAAFAQL AFTALSILPA GPVIGASGGV
FGLLLAYAVL FPNRIIVPLI PPIPMPAWVF ATLYAIVELT LGVSGTEVNV AHFAHLGGMA
GSGVLLWHWL HGTPRES
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