Gene Rpic_4393 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_4393 
Symbol 
ID6286008 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010678 
Strand
Start bp701759 
End bp703507 
Gene Length1749 bp 
Protein Length582 aa 
Translation table11 
GC content60% 
IMG OID642618874 
Productintegral membrane sensor signal transduction histidine kinase 
Protein accessionYP_001892915 
Protein GI187926570 
COG category[T] Signal transduction mechanisms 
COG ID[COG4585] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAGCGACC CAGGGAGCAA TCCCCGCATC TTCCTGTCGA CCGTCTTGCC CCGACCCAAT 
CAGCAGCGCC TGGTCACGGC AGTGATGCTG GCGTCCGTCG TGGTCTTTGT GGCCGTATTG
CCGTTTGCTC AATGGCAGCT GGCGCCGGTC TGGGGGTTCA TTCCCGTCTA TGAATCCGCG
GTCGTCATCA ACGACCTTGT CACCGCTGCG ATGCTGGTCG GGCAGTTCAC CCTGCTCCGC
TCTCCAGGAT TGCTGGCCCT GTCATCGGGC TACTTCTTTA CCGCCACGGT CGCGGCGGTG
CACATGCTCA GTTTCCCTGG GCTGTTCTCT GCATCGGGGC TTTTGGGTGC GGGCCCGCAA
ACCACAGCGT GGCTTTACAT GTTCTGGCAC GGAGGGTTTC CACTGTCCCT GATCGGCTAT
GCCCTTCTGC AAGAGAACGA GCGAATACGG CGTATCAGGT TGTCGCGCGC CGTCTCTCCC
GTTCTATGGG CTGCCGGCGC CGTGCTGCTT TTGGCTTATG GGCTGACTGC GCTGGCGACC
CACCCGTCTC TCCTGCCGGC CATCATGCGC GGGAACGGAT ATACCGGCGC CATGTCAACG
ACAGTCAGCA TTGTGTGGAT GCTGAATGTG CTGGCCGCAG CAATTCTGTG GCGGCACCGC
GGCCACTCGT TGCTGAATCT ATGGTGTACG GTGGTCGCCG TCACCTCGGC ATTTGAGGTG
GCACTTTCTG CCGTGTTCAA CCACGGGCGG TTCGATCTCG GTTTTTACGC CGGCCGCGCC
TATGGTCTTG TCGCTTCCGG CTTTGTTCTG GTCGGGCTGA TCATCGAACA TGCCAGGCTT
TACGCCATGC TGGTGAAAGC ACTGGATAAC GAGAGCGCGG CGCGCGCAGG CGCCTTGGAG
AAAACGCAAC AGCTGAACGC GGCGAACGAG CATCTCGAGC AGCGCGTCAA AGACCGCACC
GCCCAACTGA GCGCTACGAA CAGCGAGCTT CGACAGGAAA TCACCGAGCG TAAGCGTGCC
GAGCAGGCGC TCGAGCGCTC GAGAGAGGAA TTGCGTGAGC TGGCAGCGAT CAGCTCAAGG
GCACGTGAGG AAGAGCGGCG GCGCCTTTCA CGCGAGCTTC ACGATGAGCT TGCCCAATCG
CTGGCAGCGC TTAAGGTCGA CATGCAAATG TTGGAGCACA AGCTTGATGC CACGAACGCG
CCGGTTGCCG AACGCTTGAG CGCAATGGAA CACGCCGTAG ATGACATGAT CCGAGCGACA
CGTCGTCTCG CGTCCGATCT GCGCCCCTCC ATGCTCGATG ATCTCGGCCT CGTACCTGCG
TGCAGATGGC TTGTCGAGTC GTTTCAACGG CGGCACCGCA TTCATTGCGA ACTGAAGATC
GTACCCGGGC ACTTGGAACT TCCCGAGCCT TTTGCATCCA CCGTATATCG TGTCCTGCAG
GAGTGCCTGG CCAATGTAGC GCGCCATGCC GGCGCGTCGG CTGTACATGT ACGGCTGCTC
TATGAGGCGT CCATCGTCCA GCTTTCCGTG CAGGACGATG GCATCGGTTT TGACCCCGCG
CATCCGAGAA AGGATCTGTC TTTCGGGCTT GTGGGCTTGC GTGAGCGCGC CTATCTTGTG
CGCGGCAGCT TAAGCATCGA ATCGTCGCCA GAATCCGGAA CGTTGATCGA ACTCACCATT
CCGCAAACGA TGGTCACATC TCCGCAATTG CCGCTGCCAG CTCCCGGTGC CGAGCCCAAG
GCAATGTAA
 
Protein sequence
MSDPGSNPRI FLSTVLPRPN QQRLVTAVML ASVVVFVAVL PFAQWQLAPV WGFIPVYESA 
VVINDLVTAA MLVGQFTLLR SPGLLALSSG YFFTATVAAV HMLSFPGLFS ASGLLGAGPQ
TTAWLYMFWH GGFPLSLIGY ALLQENERIR RIRLSRAVSP VLWAAGAVLL LAYGLTALAT
HPSLLPAIMR GNGYTGAMST TVSIVWMLNV LAAAILWRHR GHSLLNLWCT VVAVTSAFEV
ALSAVFNHGR FDLGFYAGRA YGLVASGFVL VGLIIEHARL YAMLVKALDN ESAARAGALE
KTQQLNAANE HLEQRVKDRT AQLSATNSEL RQEITERKRA EQALERSREE LRELAAISSR
AREEERRRLS RELHDELAQS LAALKVDMQM LEHKLDATNA PVAERLSAME HAVDDMIRAT
RRLASDLRPS MLDDLGLVPA CRWLVESFQR RHRIHCELKI VPGHLELPEP FASTVYRVLQ
ECLANVARHA GASAVHVRLL YEASIVQLSV QDDGIGFDPA HPRKDLSFGL VGLRERAYLV
RGSLSIESSP ESGTLIELTI PQTMVTSPQL PLPAPGAEPK AM