| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4391 |
|---|
| Symbol | |
|---|
| ID | 6286005 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010678 |
|---|
| Strand | - |
|---|
| Start bp | 696722 |
|---|
| End bp | 699382 |
|---|
| Gene Length | 2661 bp |
|---|
| Protein Length | 886 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642618872 |
|---|
| Product | formate dehydrogenase, alpha subunit |
|---|
| Protein accession | YP_001892913 |
|---|
| Protein GI | 187926568 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3383] Uncharacterized anaerobic dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01591] formate dehydrogenase, alpha subunit, archaeal-type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.410335 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGCGAC TGACGATCGA CGGCAGCCCA TTGGAGGTGG CGGAAGGCGC CTTGCTGATC
GACGCGCTGT CGACGGCGGG CAAGGCAGTT CCGCACGTGT GCCACGACAA ACGTTTGACA
CCTTCTGGCG CGTGCCGCCT GTGTCTCGTG CTGGTCGAAG GCCAACGGCG GCCGGTTGCG
AGTTGCACAG CCGAAGTGGC TGAAGGCATG GTCGTGCAGA CGCGCAGCCA TGCGCTCGAC
ACACTGTGCC GCACGAATCT GGAGCTCATT GCCGCGCGCT ATCCGCGAAC GGCGTATGCC
GCAGACCCGA AGCACCCGTT CCACCGTCTG CTGGCCGAAT ACGGTGTGCC GCCCGGGGGC
AAGCACGAGG ACGGATTTTT TACAGATGAC AGCCATCCCT ACCTTGGCGT CGGCATGGAA
CGCTGTGTCC ATTGCGACCG CTGTGTACGC ATCTGCGAGG AAGTGCAAGG GCAATTCATC
TGGGAGACGA TCGGGCGCGA CGATACGACG CGCATTGCAA TCGGCAAGGG GCCTACGTTG
CTCACAGCGG GGTGCGTCAG TTGCGGCGCC TGTGTAGACA GTTGTGCCAG CGGAGCCTTG
TTCGACAAAC GGTCCGGCGT CAAGCCTACG GCTTGGACCC GTACGACGTG CGCATACTGC
GCAGTCGGCT GCCAAATGGA AGTTGGAACG GCCGGTGGCC GCGTAGTCGT GGTGCGCCCT
GCCGATAGCC CCGTCAATCG CGGGCATCTC TGCCTCAAGG GGCGGTATGC GTTCGAGTAC
AACCACGCCC CAGACCGTGT CACCCAACCG ATGCTGCGGC GTAATGGAAG GTGGCAAGCG
GTGGGGTGGA ATGAGGCGCT TGGCTTCACG GCGTCACGGC TGCAAGACAT CATCGCCACA
AACGGGGCGG ATGCCATTGG CGTACTCGGA TCGTCACGTG CGACCAATGA GGAGAACTAC
CTGGCACAGA AGTTCGCCCG CGTGGTGCTG GGCACGCACA ACGTCGACTG TTGCGCCCGC
GTTTGCCATA CCCCCAGTGC GAAAGCGCTG AAGACGATGC TTGGCATTGG CGCAGCCACC
AACACCTTCG ATGATATCGA GCATGCGAGC GCGTTCCTGA TCTGCGGCGC GAACCCGACC
GAGAATCATC CGGTCGTCGG AGCGCGCATC AAGCAGGCCG TGTCGAGGGG AGCGCAGCTC
GTGGTCATCG ACCCGCGCCG TACAGAACTG GCGGCGTTGG CCGACGTGCA TCTGCCAGTG
CGCGCTGGCA GCAACGTGCT GCTGTTCAAC GCGTTGGCCG CCGCGATCAT CGAGGAAGGG
TGGGTTGATC GCACGTTTCT GTCCGAGAGG GTCATCGGCT TCGATGCCTT CGCTGCGCAT
GTCGCGGACT ACGCTCCTGA GAGCGTTGCC GAACGATGTG GCGTGTCGGC TCCGGCCATT
CGTGCCGCCG CCAGAATCTA CGCCAAAGGG CAGCCCGCCA TGTGTTTTCA TGGCCTGGGC
GTAACCGAAC ACCTGCAAGG CAGCGAAGCG GTGATGGCAC TCATCAACCT GGCGCTGCTA
ACGGGCAATC TCGGTCGGCC GGGCAGCGGC ATCAATCCAT TGCGTGGGCA GAACAACGTA
CAGGGCGCAG CACAGATGGG ATGCGACCCG GCTACCCTCA CCGGCGCCCA GTCCATTGGC
CAGGCGGGCG CGCGCTTTGA ACAGGTGTGG GGTGCCAAAC TGCCCGCCAC GCGCGGGCTG
AATGTCGTAG AAATGATGGA TGCAGCCCAG GCGGGGCGGC TCAAGGCGCT GTGGGTGATG
GGCTACGACA TTTATCTCTC GCTGGCCAAT GCATCCGCAA CGGCTGCCGC GCTTGGCGCC
TTGGATCTGG TGATTGTGCA AGACCTGTTT ATCAACCAGA CGGCTGCGGC GTTCGGTACG
GTGTTTCTGC CCGCGGCATC GGCCTTCGAG AAAGAGGGCA CCTTCATGAA CTCGGATCGA
CGCGTACAGC GTGTTCATGC TGTCACGACG GCTCCTGGGC AGGCACGCTC CGACTGGTGG
ATTATCCAAG CGCTGGCTGC ACGCATGGGC AAGCCGGAGG GTTTCGAGTT TGACGGCCCC
GAGCAGATCT GGGATGAAGT GCGCGCGCTC TGGCCAGAGG GCGCCGGCTT GGCGTATTCG
CGCCTGGACG GCGAAAACCT ACATTGGCCG TGCCCTGACG AAACGCACAC CGGAACACCC
GTGCTCCACC GGGAACGTTT TTCCGGCGGC AAGACGGCCG CTCTGATACC GGTCGCCTAT
GTGCCGACGC CCGAGCGGCC AGACGATGAC TATCCCTTTC TTCTGACCAC AGGTCGCGTG
CTGGAGCACT TCAACGCCGG CACGATGAGC TACCGCACCC CGAACGCAGC GCTACGGCCG
TCGGACACGC TGGACATGGC ACCAGCGGAT GCAGCACGCC ACGGCTTTAC CGAAGGTGAT
GTGGTCGAGG TATCAAGCCG GTATGGTTCC GCGATCCTGC CGTTGCATAT CAGCCATGCG
ATGCAGATTG GACAATTGTT CTGCAGTTTT CACCGCGCCG ATCTCCTGGT CAACCGATTG
ACCTCTCCCG TGCGAGACCG GCTGGTGCAT ACGCCCGAAT ATAAGGTGAC TGCGGTACGG
GTGAAAAAGC GCTGCAACTG A
|
|---|
| Protein sequence | MVRLTIDGSP LEVAEGALLI DALSTAGKAV PHVCHDKRLT PSGACRLCLV LVEGQRRPVA
SCTAEVAEGM VVQTRSHALD TLCRTNLELI AARYPRTAYA ADPKHPFHRL LAEYGVPPGG
KHEDGFFTDD SHPYLGVGME RCVHCDRCVR ICEEVQGQFI WETIGRDDTT RIAIGKGPTL
LTAGCVSCGA CVDSCASGAL FDKRSGVKPT AWTRTTCAYC AVGCQMEVGT AGGRVVVVRP
ADSPVNRGHL CLKGRYAFEY NHAPDRVTQP MLRRNGRWQA VGWNEALGFT ASRLQDIIAT
NGADAIGVLG SSRATNEENY LAQKFARVVL GTHNVDCCAR VCHTPSAKAL KTMLGIGAAT
NTFDDIEHAS AFLICGANPT ENHPVVGARI KQAVSRGAQL VVIDPRRTEL AALADVHLPV
RAGSNVLLFN ALAAAIIEEG WVDRTFLSER VIGFDAFAAH VADYAPESVA ERCGVSAPAI
RAAARIYAKG QPAMCFHGLG VTEHLQGSEA VMALINLALL TGNLGRPGSG INPLRGQNNV
QGAAQMGCDP ATLTGAQSIG QAGARFEQVW GAKLPATRGL NVVEMMDAAQ AGRLKALWVM
GYDIYLSLAN ASATAAALGA LDLVIVQDLF INQTAAAFGT VFLPAASAFE KEGTFMNSDR
RVQRVHAVTT APGQARSDWW IIQALAARMG KPEGFEFDGP EQIWDEVRAL WPEGAGLAYS
RLDGENLHWP CPDETHTGTP VLHRERFSGG KTAALIPVAY VPTPERPDDD YPFLLTTGRV
LEHFNAGTMS YRTPNAALRP SDTLDMAPAD AARHGFTEGD VVEVSSRYGS AILPLHISHA
MQIGQLFCSF HRADLLVNRL TSPVRDRLVH TPEYKVTAVR VKKRCN
|
|---|
| |