Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_4378 |
Symbol | |
ID | 6285985 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010678 |
Strand | - |
Start bp | 682880 |
End bp | 684436 |
Gene Length | 1557 bp |
Protein Length | 518 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642618859 |
Product | thymidine phosphorylase |
Protein accession | YP_001892900 |
Protein GI | 187926555 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0213] Thymidine phosphorylase |
TIGRFAM ID | [TIGR02645] putative thymidine phosphorylase |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTGTCA TGACCACCGT CTCCATGCCC CCAGTTGACG CGTCCATTGC CCCGCTGGGA TGCCTCAGGT TCAAGGCGCT TGGCATTGAC ACGTGGCAGG AGCACGTCAT CTACATGCAC CCTGACAGCG CGATCTGCCG GTCCGAGGGC TTTGCCGCGC AGGCCCGCGT AGAAGTCCAG ATCGGGCAGC GATCGCTGAT CGCCACGCTG AACCTCGTGG GCTCGGGGTT GCTGGAAAAG CATGAGGTGA GCCTGTCAGC CAGCGCGGTC GATTCGTTGA TGGCGCGCCC GGGTGACGAA GTCTGCGTCA GGCACGCGCC GTCGCTTGAG TCGCTGCGCG CCCTGCGGGC CAAGATCTAT GGCGGGCATC TGGACGCCAA GCAATTGCAG GAGATCATTG CTGACATCTC GCATGAGCGT TATGCCGATG TCCATATCGC GGCATTCCTG AGCGCCTGCG CATCCAGCCG CATGACCATC AAGGAAACCA TCGACCTCAC ACAAGCGATG GTCGACTCCG GAGAGCGTCT GCAGTGGGAC CGCGCGGTCG TGGCAGACAA GCACTGCGTG GGCGGTCTGC CCGGCAATCG CACCAGCCCT ATCGTCGTTG CCATCTGTGC GGCGGCGGGG CTGCTGCTGC CTAAAACGTC GTCACGCGCC ATCACCTCGC CTGCGGGTAC CGCCGACATG ATGGAAACGC TCACCCGCGT CAACCTGAGC GCGGCAGAGT TGCGATGCGT TGTGGGGCAG GTTGGGGCAT CGCTCGCGTG GGGCGGGGCA TTGAGTCTCA GCCCGGCGGA CGACGTCTTG ATTCGAGTGG AAAGGGCACT GGACGTCGAC AGCGATGCCC AGCTTGTGGC GTCCATTCTC TCCAAGAAGA TCGCGGCCGG GTCCACCCAT GTGTTGATCG ACGTGCCTGT GGGGCCGACG GCCAAAGTCC GCAGTGTCGA AGACCTTGAA CGCCTTGAAA TGCTGCTCAA GCGTGTGGCG CAAGCTTTTG GGGTGCAGGT GCTGATGGTG CGCACGGATG GCGCGCAGCC CGTTGGCCGC GGGATCGGCC CTGCGCTGGA AGCAAGAGAC GTTCTGGCTG TACTCCAACG GACCCCTACC GCGCCGTTCG ACTTGCGGGA ACGGTCTCTA TTGCTGGCCG GCGCATTGCT GGAGTTTTGC GGTACGGCTG TTGCCGGAAC GGGGCTTGTC ATGGCAACCG ACCTGCTGGA CAGCGGTGCT GCATGGCGAA AATTCGAAGC GATCTGCGAG GCGCAGGGTG GCTTGCGCAT CCCCGGAGAA GCCGTGTTCC GCCGCGACGT CGTTGCCGAG CAAAATGGAA TCGTCACCCA CATCGACAAC CGCCACCTTG CCCGCATTGC GAAGCTTGCG GGCGCGCCGA TGCGTCAAGT CGCGGGCGTA CAGATGCGTG TGCGACTGCG GGATCAAGTG AATGTTGGGC AACCGCTGTT CACGATCCAC GCGCAGGCCT CGGGCGAGCT GGAGTATTCG TCGGCATATG CGTTGACGCA TGCTGTGGTG GGACTGTCTC CGATGGGAAT CGGTTGA
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Protein sequence | MPVMTTVSMP PVDASIAPLG CLRFKALGID TWQEHVIYMH PDSAICRSEG FAAQARVEVQ IGQRSLIATL NLVGSGLLEK HEVSLSASAV DSLMARPGDE VCVRHAPSLE SLRALRAKIY GGHLDAKQLQ EIIADISHER YADVHIAAFL SACASSRMTI KETIDLTQAM VDSGERLQWD RAVVADKHCV GGLPGNRTSP IVVAICAAAG LLLPKTSSRA ITSPAGTADM METLTRVNLS AAELRCVVGQ VGASLAWGGA LSLSPADDVL IRVERALDVD SDAQLVASIL SKKIAAGSTH VLIDVPVGPT AKVRSVEDLE RLEMLLKRVA QAFGVQVLMV RTDGAQPVGR GIGPALEARD VLAVLQRTPT APFDLRERSL LLAGALLEFC GTAVAGTGLV MATDLLDSGA AWRKFEAICE AQGGLRIPGE AVFRRDVVAE QNGIVTHIDN RHLARIAKLA GAPMRQVAGV QMRVRLRDQV NVGQPLFTIH AQASGELEYS SAYALTHAVV GLSPMGIG
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