Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_4367 |
Symbol | |
ID | 6285968 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010678 |
Strand | - |
Start bp | 668197 |
End bp | 669372 |
Gene Length | 1176 bp |
Protein Length | 391 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642618848 |
Product | efflux transporter, RND family, MFP subunit |
Protein accession | YP_001892889 |
Protein GI | 187926544 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.122634 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCGTG GTGGCCTGCG AAAGACGCTC GCACTTGCAA GTGCTGCGCT GGCGCTGGCA TTGGCGCTCA CGTACGCACT CTGGCCGGTA CCTGCGGCCG TGGACACAGG GCGTGTCACC CGTGGGCCGC TTCAAGTCAC GATCGATGAA GACGGCGAAA TCCGTGCGCA TGATCGTTAC GTCATCACTG CGCCCATCAC AGGCCGACTG CTTCGCGTTG AACTGCATGA AGGCGATCAG ATTAAGGCAG GGCAGGTGAT CGCCGTTCTG GTGCCGGTGC CGATGACTCC GGGAGAACGA GCTGCCCAAC GCGCACGTGT TGATGCGGCA GAGGCAATTT TCAGTGAGGC CCAGGCGCGG GCCGCGCATG CGCGGGCAGA CTACGACCAA GCGCGCCGAA ACTTGGACCG GGGCGAAACG CTTTTGAGCA GCGGTGCCAT GTCCAGGCAG GAAGTGGAGC AGATGCGGAC CATGGCTGCC TCAAGTGCCA GCGATCTGAC AGCAGCACGC GCAAGAGAAA CGTCCGCCGC CGCCGACGTT CGTGTCGCCA TGGCAAATTT GAAGGCGTTG GAAGCCGGGC AACCCGTTGA AGTTCGTGCC CCGACCAATA CCGTTCTGTT GCGCATCGAG CAACAAAGTG AGCGCGTGGT GCTTGCAGGC GCGGCCTTGA TGCTTCTGGC CGACCCATCG CGCTACGAAC TCGTCGTCGA CGTGCTATCG ACCGATGCGG TCAAGATCAG TCCGGGCATG CGCGTATCGG TAGTGGAGTG GGGCGGTCCG TGGGCCGTCA ACGCCACGGT CCGGACAGTA GGTCCAGGGG CGTTTACCAA GGTGTCGGCG CTCGGGGTTG AAGAACAGCG CGTCCATATT GTGGCGGATC TTGTCGACCC GCCAGGCAGG TTGAATGATG GGTACCGCGT ACAAGGCCGC ATCGTCATCT GGGAACAACC CGACGTACTG AAGCTGCCGA TTGGCGCGTT ATTCCGCTGC GGCGGTAACT GGTGCACGTT TATCGTTAAG AACGGAAAAG CTGTACAGCG AATCATTCAG ATCGGACAGC GCAACGCGGA GGAAGCCCAG GTGCTCGATG GGCTTCAGGA CCACGACACC GTGGTCGTCT ATCCTCCGAC CACGCTCAGT GACAGCATGA GCGTGCGCCC CCTGAACGCC CGCTGA
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Protein sequence | MKRGGLRKTL ALASAALALA LALTYALWPV PAAVDTGRVT RGPLQVTIDE DGEIRAHDRY VITAPITGRL LRVELHEGDQ IKAGQVIAVL VPVPMTPGER AAQRARVDAA EAIFSEAQAR AAHARADYDQ ARRNLDRGET LLSSGAMSRQ EVEQMRTMAA SSASDLTAAR ARETSAAADV RVAMANLKAL EAGQPVEVRA PTNTVLLRIE QQSERVVLAG AALMLLADPS RYELVVDVLS TDAVKISPGM RVSVVEWGGP WAVNATVRTV GPGAFTKVSA LGVEEQRVHI VADLVDPPGR LNDGYRVQGR IVIWEQPDVL KLPIGALFRC GGNWCTFIVK NGKAVQRIIQ IGQRNAEEAQ VLDGLQDHDT VVVYPPTTLS DSMSVRPLNA R
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