Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_4333 |
Symbol | |
ID | 6285911 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010678 |
Strand | + |
Start bp | 639276 |
End bp | 642275 |
Gene Length | 3000 bp |
Protein Length | 999 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642618814 |
Product | transposase Tn3 family protein |
Protein accession | YP_001892855 |
Protein GI | 187926510 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4644] Transposase and inactivated derivatives, TnpA family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.0519662 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCACCG TCGAGCGCAC TGCCTACCCG CGTTTCCCAA AGGTCTTCTC CACGAAAGAG CTGCAGGCCT GCTACACGCC GACCGCTGAG GAGTTGGACT GGGCAACCCG CTCGACCCGC GGCCAGAGTC CGCGCCTAGG TCTCTTGGTG CTGCTCAAGA TCTTCCAGCA ACTGCACTAT TTCCCCTATC TTGATGCGAT TCCCACCGCC GTAGTCGATC ACGTGCGAGT TTGCGCGGGG TTGGACCCCG ATACGCCGTT CGGTTACGAC CGCAAAGTCT CTCCCACGCT GTTCCGGCAT TACGTCGTCG TGCGGCAATT CCTCGGCGTG CAACCCTACA TTGGCACCGA CGCCAATGAG GTCACCATCC GCGCTGCACG TGAAGCGGCC GAGACGATGG ATCAGCCGGT GGACATTATC AACGCGACTA TTGATGCGCT GATCTTGCAG CAGGTTGAAC TGCCTGCGTT CTCAACGCTC GACACCATCG TCGAGCAAAT CCATGCCCGC ACCCAAAACG CAATGTTCAG GCGGGTCGCA CGCCGGCTCT CTGAAGAGGA TCGGCAGCGC CTGGACAAGC TTCTCACGCG CGAATTCGCC AACCGGCAGA CCGCCTACAA CAACATCAAG CGACATGCCC GGCGGCCCTC GCGCAAACAC CTGAACCTGC TGATCGAGCA TCTGGAGTGG TTGGATTCTT TTGGCGACCT ATCCGGCGTC CTGGAAGGCG TGCCTGCCAC CAAGCTACGT TCGCTGGCCA ACCAGGCCAT GGGCCTGGAC GCAGCCAACC TCAAGGAAAC GCTGCCTGAG AAGCGCTATA CGTTGATCGT GGCCTTGCTT GCTCACATGC GCGTGCGCAG TCGCGACGAT CTCGCCGAAA TGTTTATCCG GCGTATGGGC GCGATCCACA AGCGGGCCCA GGACGAACTG GAATACATCC AGTCTCGCCA GCGCGCCAAG CTCGAAGGCC TTGTCACCGT GCTGGACGGT GTCGTCGATA TCGTCGCCGA TGGCGGTGAC GATGCCCGAA TCGGCGCGCA GGTGCGCAAG CTGTTGGCTC CCAATGGCGA CCTGGAGCCC CTGCGCGAGC GCTGCGCCGA AGTGCGGGCT TTCAGCGGCA ACAACTATCT GCCGCTGTTG TGGCGGCACT TCCGCGCCCA CCGTTCGGTG ATGTTGCGCC TCGCCCGCGT GTTGGAGTGG GAGTCGACCA GCCAATCACG CACGTTGTTA GCCGGGCTGG AGGTCGCGCT GGAAAACGAA TCACTGCACC GGGAGTGGAT CGCTGCTGAA GTCGATCTCA GTTTTGCCTC CGAGCGCTGG CGCAAGCTGG TCCGGCGAGC GCACCACGAG GGTCCGCCCA CCAACCGGCG CTACTTGGAG TTGTGCGTGC TGTCCCACAT GGTCAACGAG TTGCGCTCGG GTGATCTGTG CGTGGTGGGG TCAGACGCCT TTGCCGACTA CCGGGGCCAC CTGTTGCCGT GGCGCGAGTG CGAGCGGCGC TTGCCAGAGT ACTGCGCCAA GCTGGATCTG CCGGCCAACG CGCAGGAGTT CGTCGCGCAC CTCAAGCAGT GGCTGGCCGA CGCCGCGCAG ACGCTGGACA AAAGTTTTCC GGACAAGCGC CAGCACGTCA CCATCAGCGC TGACGGCGAA CCCTTACTCA AGCGCACCGC TGCGCGCGAA ACTCCGCCCT CGGCCGTTGC CTTGCAGCAG GCGCTGATCC GCCGCATGCC GACGCGCAAC CTGCTCGACG TGCTGGCCAA TATCGAGCAC TGGACCCAGT TCACCCGGCA CTTCGGGCCG CTCTCCGGCA ACGATCCTAA GATCCGCAAC GCCGCCGAAC GCTATCTGCT GACGATCTTC GCGATGGGTT GCAATCTCGG ACCCACTCAA GCTGCGCGCC ATATGGGCGA TCGCGTCACC CCCCATATGA TGTCGTTCGT CAACCGGCGG CACATGAGCC TGGAGAAGCT GGAGACCGCG CAGCGCGAGC TGATCGAGCT GTACCTGCGC CTGGATTTGC CTAAACACTG GGGCGACGGC AAAACGGTGG CCGCCGACGG TACCCAATAC GACTTCTACG ACAACAATCT GCTGGCCGGC TATCATTTTC GTTACCACAA GATGGGCGCC GTGGCTTACC GGCATGTGGC CGACAATTAC ATCGCGGTGT TTCGGCACTT CATCCCGCCT GGTGTGTGGG AAGCCATCTA TGTCATCGAA GGGCTGCTCA AGGCCAACCT GAGCGTCGAG GCCGACACCG TGCACGCCGA CACGCAGGGG CAGTCGGCGG CGGTCTTCGC TTTCACCCAC TTGCTTGGCA TCAATCTGAT GCCCCGCATT CGCAACTGGA AGGAACTGGA TCTGTACAAG CCCGATGCCG GCGTCAAATA CAAGCACATC GATTCGTTGT TCTCGGCGGT GGTCGACTGG GATCTGATCG CTTTTCACTG GCAGGACCTG ATGCAGGTGG CGCTGTCGAT CCAGGCCGGC ACCATCTCTT CGCCGCTGCT GCTGCGCAGA TTGGGCTCGG AGAGCCGCAA GAACCGCCTC TACCTGGCCG CGCGAGAACT GGGCAACGTC GTGCGCACCG TGTACCTGCT CGAATGGGTC GGCAGTCGCG AGCTGCGCCA GGAAGTGACC GCCACCACCA ACAAGATCGA GTCGTACAAC GGCTTTGCGA AGTGGTTCTC GTTCGGTGGT GACGTGATCG CGGAAAACGA GCCCGAGGAG CAGCAGAAAC GCCTGCGCTA CAACGACCTG ATCGCCTCGG CCGTGATCCT CCAGAACACC GCAGACCTGA TGCAGGCCCT ACGCACGATG GTCAGCGAGG GCATCAAAGT GAACGTCGCC GACATCGAAT TCCTGAGTCC TTATCTGACC CACAACATCA AGCGCTTTGG TGACTACAAG CTGCACCTAG AGCGCGTACC GGAGGCCTGG ATTCGCGATG GGTTGTTCGC GGGACCCGCC CGCGCTGTCC GCAGGGCTCG CCATGCCTGA
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Protein sequence | MATVERTAYP RFPKVFSTKE LQACYTPTAE ELDWATRSTR GQSPRLGLLV LLKIFQQLHY FPYLDAIPTA VVDHVRVCAG LDPDTPFGYD RKVSPTLFRH YVVVRQFLGV QPYIGTDANE VTIRAAREAA ETMDQPVDII NATIDALILQ QVELPAFSTL DTIVEQIHAR TQNAMFRRVA RRLSEEDRQR LDKLLTREFA NRQTAYNNIK RHARRPSRKH LNLLIEHLEW LDSFGDLSGV LEGVPATKLR SLANQAMGLD AANLKETLPE KRYTLIVALL AHMRVRSRDD LAEMFIRRMG AIHKRAQDEL EYIQSRQRAK LEGLVTVLDG VVDIVADGGD DARIGAQVRK LLAPNGDLEP LRERCAEVRA FSGNNYLPLL WRHFRAHRSV MLRLARVLEW ESTSQSRTLL AGLEVALENE SLHREWIAAE VDLSFASERW RKLVRRAHHE GPPTNRRYLE LCVLSHMVNE LRSGDLCVVG SDAFADYRGH LLPWRECERR LPEYCAKLDL PANAQEFVAH LKQWLADAAQ TLDKSFPDKR QHVTISADGE PLLKRTAARE TPPSAVALQQ ALIRRMPTRN LLDVLANIEH WTQFTRHFGP LSGNDPKIRN AAERYLLTIF AMGCNLGPTQ AARHMGDRVT PHMMSFVNRR HMSLEKLETA QRELIELYLR LDLPKHWGDG KTVAADGTQY DFYDNNLLAG YHFRYHKMGA VAYRHVADNY IAVFRHFIPP GVWEAIYVIE GLLKANLSVE ADTVHADTQG QSAAVFAFTH LLGINLMPRI RNWKELDLYK PDAGVKYKHI DSLFSAVVDW DLIAFHWQDL MQVALSIQAG TISSPLLLRR LGSESRKNRL YLAARELGNV VRTVYLLEWV GSRELRQEVT ATTNKIESYN GFAKWFSFGG DVIAENEPEE QQKRLRYNDL IASAVILQNT ADLMQALRTM VSEGIKVNVA DIEFLSPYLT HNIKRFGDYK LHLERVPEAW IRDGLFAGPA RAVRRARHA
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