Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_4302 |
Symbol | |
ID | 6285842 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010678 |
Strand | - |
Start bp | 599091 |
End bp | 599924 |
Gene Length | 834 bp |
Protein Length | 277 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642618784 |
Product | Shikimate dehydrogenase substrate binding domain protein |
Protein accession | YP_001892825 |
Protein GI | 187926480 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.261659 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTTCTG GAAAAACCAC CCTCATCGCC CACATCGGCT ACCCGACCGA GACGTTCAAG TCGCCGATGA TCTACAACCC CTGGTTCGAG CAAAAAGGCA TCGATGCCGT TGTGATGCCC ATGGGGGTCA AGGCAGAGGA TTACCCGCAG AGCTTCGCGT CGATCTGCCG TTTCACCAAC CTGCGGGGCG CGCTGATCAC CATGCCGCAC AAGGTCACCA CGGTGGAGTT GGTCGATGAA GTCACGCCGG CGGTGCGCAT TGCCGGCGCC TGCAATGCGG TGCTCAAGCG CGATGACGGC ACGTTGCTGG GCGACCAGTT CGACGGCGCC GGCTTCGTGC GCGGCGTGCT GCGCAAGGGG CGCCAGCTGG AAGGCGCGCG CGTGCTGCTC TCGGGCGCCG GCGGTGTCGG CTCGGCGATT GCCGCGTCGC TGGCGGCGGC CGGTGTGGGC GAGTTGGCCC TGTACGACAC GCGCGCAGAA TCCGCCGAAT CGCTCGGCCG ACGTCTACTC GAGCACTACC CCGCGCTTGC GGTGGGTACC GGATCGAATG ATCCGGATGG CTTCGATGTG GTCGTCAACG CCACACCTGT CGGTATGAAG GACGATGATC CTCTGCCCTT CGACGCCGCC CGCATCGCAC CGAGCTGCTT CGTCGGCGAG GTCGTCATGA AATCCGAGTA CACGCCGCTG CTGCGCGCGG CGCTCGACAA GGGTTGCGAT GTCCAGGTCG GCACCGACAT GCTGTTCGAG ATGATTCCCG CGTACCTGGA GTTCTTCGGC TTCGGCACCG CCACCGCAGA TGAGCTGCGG CGCAGCGCTG CCATTGCCTA CTGA
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Protein sequence | MISGKTTLIA HIGYPTETFK SPMIYNPWFE QKGIDAVVMP MGVKAEDYPQ SFASICRFTN LRGALITMPH KVTTVELVDE VTPAVRIAGA CNAVLKRDDG TLLGDQFDGA GFVRGVLRKG RQLEGARVLL SGAGGVGSAI AASLAAAGVG ELALYDTRAE SAESLGRRLL EHYPALAVGT GSNDPDGFDV VVNATPVGMK DDDPLPFDAA RIAPSCFVGE VVMKSEYTPL LRAALDKGCD VQVGTDMLFE MIPAYLEFFG FGTATADELR RSAAIAY
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