Gene Rpic_4270 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_4270 
Symbol 
ID6285764 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010678 
Strand
Start bp565602 
End bp566387 
Gene Length786 bp 
Protein Length261 aa 
Translation table11 
GC content63% 
IMG OID642618753 
Product3-hydroxybutyrate dehydrogenase 
Protein accessionYP_001892794 
Protein GI187926449 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01963] 3-hydroxybutyrate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.149446 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.650814 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTGATT TGAAAGGCAA AGTCGCCGTC GTCACGGGTG CCGCCAGCGG CATCGGCAAG 
CAGATCGCCC TCACGCTCGC CAATTCGGGC GCGGCCATTG CCATCGTTGA CTTGAACGAA
GACGGCGCCA AGGCCGTCGC CAAAGAGATC ACCGATGCAG GCGGCAAGGC GATCGGCCTG
CGCATGGACG TGACCGATGA ACAAGCCGTG GACAGCGGCA TCGACCGCGT GGCCGAAGAA
CTCGGCTCGG TCGACATCCT GGTCTCGAAT GCCGGCATCC AGATCGTCAA CCCGTTCGTG
AGCTACTCGT TTGCCGACTG GAAGAAGATG CAGGCCATCC ACGTCGACGG CGCGTTCCTG
ACCACGCGCG CCGCACTGCG CCACATGTAC AAGGACGACC GTGGCGGCGT GGTGATCTAC
ATGGGCTCGG TGCACTCGCA CGAGGGCTCG CCGCTCAAAT CGGCCTACGT GGCGGCCAAG
CATGCACTGC TCGGCCTGAA CAAGGTACTG GCCAAGGAAG GCGCGGCGCA TAACGTGCGC
TCGCACGTGG TGTGCCCCGG CTTCGTGCGC ACGCCGCTGG TCGAAAAGCA GATTCCCGAA
CAAGCCAAGG AACTCGGCAT CAGCGAAGAT GACGTGGTGA AAAAGGTCAT GCTGGGTGAT
ACCGTGGACG GCGTATTCAC CACGGTGGAA GACGTGGCCG AGACGGTGCG CTTCCTGGCC
ACGTTCCCAA GTGCCGCGCT GACCGGCCAA TCGTTCGTGG TGAGCCACGG CTGGTTCATG
CAATAA
 
Protein sequence
MSDLKGKVAV VTGAASGIGK QIALTLANSG AAIAIVDLNE DGAKAVAKEI TDAGGKAIGL 
RMDVTDEQAV DSGIDRVAEE LGSVDILVSN AGIQIVNPFV SYSFADWKKM QAIHVDGAFL
TTRAALRHMY KDDRGGVVIY MGSVHSHEGS PLKSAYVAAK HALLGLNKVL AKEGAAHNVR
SHVVCPGFVR TPLVEKQIPE QAKELGISED DVVKKVMLGD TVDGVFTTVE DVAETVRFLA
TFPSAALTGQ SFVVSHGWFM Q