Gene Rpic_4251 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_4251 
Symbol 
ID6285737 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010678 
Strand
Start bp542130 
End bp543056 
Gene Length927 bp 
Protein Length308 aa 
Translation table11 
GC content64% 
IMG OID642618734 
Producttype II secretion system protein 
Protein accessionYP_001892775 
Protein GI187926430 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4965] Flp pilus assembly protein TadB 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.474366 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.45717 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTAGCA TGACGCTCTG GTTCGGTTGC CTCGCGCTGC TGCTGATGGG CGCATCGCTC 
ATGCTGTGGG CGGAGGCCGT ACGCCGTCGC GAGCGCGAGG CATCGCGCAG CTTTGTGCGT
GCGCAGACCG AGCAGATCAA CGCGCGTTAT CAACCGAATG TGGAGCCCGT GCCGGCAAGC
GTGCCCGACT CGTTGAATCG CGCCTGGCAG GATGCACTGC GCCGCGCAGA TATCGAGCCG
AGCCGGCGCT TCTACGTGCT GCTGATTGGC CCCGCGCTCA TGATTACGCT CGCCGTCTGG
GCGGTGTCGA GCATGTTGTC TGCCCTGACG GCCCTCGCTC TGTACGTCGT GATCGTTGCT
TTCCTGTTCT GGAACCGGAC CCGAAAGATG AACGAGCGCC TGCTGCAGCA ATTGCCGGGC
TTTCTCGATG GCGTGGTGCG GCTGATGAGC ATCGGCAGCG CGGTGCCTGC GGCGTTTCAG
GCGGCCAGCG CCAACACCGA ACAGCCGCTG CGCAACTGCC TGACTGCCAT CACGCAGATG
CAGCGCGCCG GCAAGGACCT CGACGCCGCG GTGCTGACCG TCGGCCGGCA GTATCGCGTG
AACGAATTGA TCCTGCTGTC GTCGGTGCTG CGCCTTGCTT TGCGCTACGG CGGGCGGGCC
GACATCGTGA TGGAGCGCAC GGCTGCATTC ATGCGCGACC GGCAGCAAGC CCAGCGCGAG
CTGTTTGCGC TGTCGGCAGA GACGCGGTTA TCCGCATGGA TCATCGGGCT GCTGCCCGTC
GTGGTGGGCG GTGTCATCAT CATGTTCAAC GCGGCGTACA TCATGTCGAT GTGGCGCGAT
CCGTTCGGCA AGACGTTGAT TCTTACGGCC TTCGGTATGG AAGTGCTGGG TGCAGTCATG
CTGGCCAGGC TGGCGAAATC GGTCTGA
 
Protein sequence
MSSMTLWFGC LALLLMGASL MLWAEAVRRR EREASRSFVR AQTEQINARY QPNVEPVPAS 
VPDSLNRAWQ DALRRADIEP SRRFYVLLIG PALMITLAVW AVSSMLSALT ALALYVVIVA
FLFWNRTRKM NERLLQQLPG FLDGVVRLMS IGSAVPAAFQ AASANTEQPL RNCLTAITQM
QRAGKDLDAA VLTVGRQYRV NELILLSSVL RLALRYGGRA DIVMERTAAF MRDRQQAQRE
LFALSAETRL SAWIIGLLPV VVGGVIIMFN AAYIMSMWRD PFGKTLILTA FGMEVLGAVM
LARLAKSV