Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_4251 |
Symbol | |
ID | 6285737 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010678 |
Strand | + |
Start bp | 542130 |
End bp | 543056 |
Gene Length | 927 bp |
Protein Length | 308 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642618734 |
Product | type II secretion system protein |
Protein accession | YP_001892775 |
Protein GI | 187926430 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4965] Flp pilus assembly protein TadB |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.474366 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.45717 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTAGCA TGACGCTCTG GTTCGGTTGC CTCGCGCTGC TGCTGATGGG CGCATCGCTC ATGCTGTGGG CGGAGGCCGT ACGCCGTCGC GAGCGCGAGG CATCGCGCAG CTTTGTGCGT GCGCAGACCG AGCAGATCAA CGCGCGTTAT CAACCGAATG TGGAGCCCGT GCCGGCAAGC GTGCCCGACT CGTTGAATCG CGCCTGGCAG GATGCACTGC GCCGCGCAGA TATCGAGCCG AGCCGGCGCT TCTACGTGCT GCTGATTGGC CCCGCGCTCA TGATTACGCT CGCCGTCTGG GCGGTGTCGA GCATGTTGTC TGCCCTGACG GCCCTCGCTC TGTACGTCGT GATCGTTGCT TTCCTGTTCT GGAACCGGAC CCGAAAGATG AACGAGCGCC TGCTGCAGCA ATTGCCGGGC TTTCTCGATG GCGTGGTGCG GCTGATGAGC ATCGGCAGCG CGGTGCCTGC GGCGTTTCAG GCGGCCAGCG CCAACACCGA ACAGCCGCTG CGCAACTGCC TGACTGCCAT CACGCAGATG CAGCGCGCCG GCAAGGACCT CGACGCCGCG GTGCTGACCG TCGGCCGGCA GTATCGCGTG AACGAATTGA TCCTGCTGTC GTCGGTGCTG CGCCTTGCTT TGCGCTACGG CGGGCGGGCC GACATCGTGA TGGAGCGCAC GGCTGCATTC ATGCGCGACC GGCAGCAAGC CCAGCGCGAG CTGTTTGCGC TGTCGGCAGA GACGCGGTTA TCCGCATGGA TCATCGGGCT GCTGCCCGTC GTGGTGGGCG GTGTCATCAT CATGTTCAAC GCGGCGTACA TCATGTCGAT GTGGCGCGAT CCGTTCGGCA AGACGTTGAT TCTTACGGCC TTCGGTATGG AAGTGCTGGG TGCAGTCATG CTGGCCAGGC TGGCGAAATC GGTCTGA
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Protein sequence | MSSMTLWFGC LALLLMGASL MLWAEAVRRR EREASRSFVR AQTEQINARY QPNVEPVPAS VPDSLNRAWQ DALRRADIEP SRRFYVLLIG PALMITLAVW AVSSMLSALT ALALYVVIVA FLFWNRTRKM NERLLQQLPG FLDGVVRLMS IGSAVPAAFQ AASANTEQPL RNCLTAITQM QRAGKDLDAA VLTVGRQYRV NELILLSSVL RLALRYGGRA DIVMERTAAF MRDRQQAQRE LFALSAETRL SAWIIGLLPV VVGGVIIMFN AAYIMSMWRD PFGKTLILTA FGMEVLGAVM LARLAKSV
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