Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_4250 |
Symbol | |
ID | 6285736 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010678 |
Strand | + |
Start bp | 540782 |
End bp | 542137 |
Gene Length | 1356 bp |
Protein Length | 451 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642618733 |
Product | type II secretion system protein E |
Protein accession | YP_001892774 |
Protein GI | 187926429 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.558641 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.482793 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACACAGC CCATCGAGTT CTCCAACCAG GCGGACGCCG GCAACGGCGC GTTTGCCGTT TCGCAGGCTT TCCAGGACAT CAAGGAAGCC GCCCACGAAC ACCTGCTGAC ACGCATCGAA GAACTTGGCG CCGAGTTCGG CCGCTGGTCG CGCACGGCCA TCCAGCGTTT TGTCGATCTG GAAGTGGAAG GCTTTACGCG GATGCGCCGC ATTCCCGTCA ACGAGACGGA GATCCGGCAG ATTGCCGAGG CGCTGACCAA GGAGTTGGCT GGCTTCGGGC CCATCGAAGA CCTGCTGGCC GATCCGGCGG TGGAAGACAT TCTCGTCAAC GGCCACCTGG ACGTGTACGT GTCGCGCCAC GGCATTCTGG AGCGCATTCC GGTGCGCTTT GCCGACAACA ACCACCTGCT GCGCATCGTG CGCCGCATCC TTGCGCCCAT CGGCCGGCGG CTGGACGAAT CCAACCCGAT GGTCGATGCG CGCTTGCCGG ACGGCGGCCG CATCAACGTG GTGATTCCGC CGCTGGCGCT GGAAGGGCCG GTCGTGTCGA TCCGCAAGTT CCGGAAAGAT CCGCTCAAGC CTGAAGACCT GCTTGGCCTG GGCACGATGA GCGAAGAGAT CGGGGCGCTG ATCGATTCTG CTGTGCGCGC GCGCTGCAAC ATCCTGGTAA GCGGTGGCAC CAGCTCCGGC AAGACGTCGC TGCTCAACGC AATGGCGTAT CACATTCCGA CGACCGAGCG CGTGATCACC ATTGAAGACA CGGCAGAGCT GTCGCTCAAT CACCCGCACG TGGTGCGTCT GGAAAGCCGG CCGGGCGGCT TCGAGGGCAC GGGCGTCGTC ACGATTCGGG AACTGCTGCG CAACAGCCTG CGCATGCGGC CCGACCGCAT CATCGTGGGC GAAGTGCGCG GCGGTGAAGT CCTGGAAATG CTGCAAGCCA TGAGCACCGG CCACGATGGC TCGATGGGCA CCATCCACGC CAGCAGCCCG CGCGAATGCC TCTACCGACT GGAAATGCTG GCGGGCTTTG CCGGCTTCCA GGGCAGTGAG GTGAGCCTGC GCCGGCAGAT CACCAACGCC ATTGATTTCA TCGTGCAGAT CGGCCGGCTA TCCAACGGCA AGCGTCGCAT CCTGTCGATT ACGGAAGTCA CCGGGCTCGG GGACAACATC ATCTCGACGC AGGAGCTGTA CCGCTACGAG CCCTATGTCG GCCCAGACGG CGAAGAGGTC GACCGCTGGA CGGCGCTTGG CCTGCAGCCG CATTCGCCCA AGCTGGCCCG CATGCGCAAC AGCGAAGGCG GCGGGATGGA TGGCGGCATG ACTGGATTTG GCGGCGGAGG CCGTTTCCAT GTCTAG
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Protein sequence | MTQPIEFSNQ ADAGNGAFAV SQAFQDIKEA AHEHLLTRIE ELGAEFGRWS RTAIQRFVDL EVEGFTRMRR IPVNETEIRQ IAEALTKELA GFGPIEDLLA DPAVEDILVN GHLDVYVSRH GILERIPVRF ADNNHLLRIV RRILAPIGRR LDESNPMVDA RLPDGGRINV VIPPLALEGP VVSIRKFRKD PLKPEDLLGL GTMSEEIGAL IDSAVRARCN ILVSGGTSSG KTSLLNAMAY HIPTTERVIT IEDTAELSLN HPHVVRLESR PGGFEGTGVV TIRELLRNSL RMRPDRIIVG EVRGGEVLEM LQAMSTGHDG SMGTIHASSP RECLYRLEML AGFAGFQGSE VSLRRQITNA IDFIVQIGRL SNGKRRILSI TEVTGLGDNI ISTQELYRYE PYVGPDGEEV DRWTALGLQP HSPKLARMRN SEGGGMDGGM TGFGGGGRFH V
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