| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4243 |
|---|
| Symbol | |
|---|
| ID | 6285712 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010678 |
|---|
| Strand | + |
|---|
| Start bp | 534101 |
|---|
| End bp | 535225 |
|---|
| Gene Length | 1125 bp |
|---|
| Protein Length | 374 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642618726 |
|---|
| Product | putative hemagglutinin-related transmembrane protein |
|---|
| Protein accession | YP_001892767 |
|---|
| Protein GI | 187926422 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.613213 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.280906 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCACA TTCGACACTC CATTCGCGTT GCGCCGTTGG CCTGCGCTGT TGCCGCTCTT
ATGTTGGCGG CTTGCTCTTC GGGAGGCTCC GGCTCGGGCA GTTCGCCGAA TCCGAGCCCG
AACGACACGA CGGGCGTGAC GCCCGTCGGC AAGGTCGCAA ACGGCACGGG CAACACCGTT
GTGGCGACTG GCCAGGCGGT CAGCAGCCTC GGCTCCACGC TTCAAAACGC AAACATTCCG
GGCTTGTCGG ATCAGGCCAA GGCCGGGCTG GGCGGCACGG TTGACAACGC CGGCAAGGCG
GTCAGCGATC TCGGTCTGGG CGTCCAAACC GGGCTTGGCA AGATGGGCCA GAACCCCAAT
CCGATCGGTA CAACGGTGGC CAGCACCGGC AATGTCGTGA CGGACCTGGG CCAGGCCACC
GTGAGCGCAG GCTCGCTCGT GCAAGGCCTC GGCCAAGGTT CTGGCGCACC GTTGGCACCG
ATCACTCAAC CGGTGGGCGG CGGCGTCCAG CAGATCGGCC AGGCGCTGAT TGGTGGCGGT
ACGCTGCTGG GCAGCGCGCT GTCTTCCGGC GCGGTGCAGC AGGTGACGCA GCAACTGAGC
ACGGCCATCG TGCCAGTCAC CACGCAGGTC AGCGGCGCTA CTCAGATGAT TGGCGATTCG
ACGGGCCTGG GCGGAGCCTT GAACAATCTG CTTGGGACCG TTGGCGGCGG CGTGGGCGGT
GCCGGCAACA CCATCACCGG GACGGGCGTA CCGGTGGTCT CGACCCTGGG CCCGGTGGTG
ACGTCGCTCG GGACGACTGT CGCAGCAATC GGCGGTGTCG CCACGACCGG CGGGTCGGCG
GGCAGCAACC CGCTGGGCGG CCTGCTCGGC GGCGTGGGGG GCAGCTCCGG CGGTACGACC
CCGCTGGCTC CGTTGACCGG CCTCCTGGGC GGCGCATCTG GCGGCTCCAG TCCCCTGGCG
CCTGTCACGG GCCTGCTGGG CGGCGCAGCC GGTGGCAGCA ATCCGCTGGC GCCCATCACC
AATCTGCTGA GCGGCGCGAC CAGCGCAGCC GGCGGCACAT CGGGCGGCAA TCCGCTGGCC
CCTGTCACTA ACTTGCTGGG CGGCGTTGGC AGCCCGGCGC ACTGA
|
|---|
| Protein sequence | MTHIRHSIRV APLACAVAAL MLAACSSGGS GSGSSPNPSP NDTTGVTPVG KVANGTGNTV
VATGQAVSSL GSTLQNANIP GLSDQAKAGL GGTVDNAGKA VSDLGLGVQT GLGKMGQNPN
PIGTTVASTG NVVTDLGQAT VSAGSLVQGL GQGSGAPLAP ITQPVGGGVQ QIGQALIGGG
TLLGSALSSG AVQQVTQQLS TAIVPVTTQV SGATQMIGDS TGLGGALNNL LGTVGGGVGG
AGNTITGTGV PVVSTLGPVV TSLGTTVAAI GGVATTGGSA GSNPLGGLLG GVGGSSGGTT
PLAPLTGLLG GASGGSSPLA PVTGLLGGAA GGSNPLAPIT NLLSGATSAA GGTSGGNPLA
PVTNLLGGVG SPAH
|
|---|
| |