| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4242 |
|---|
| Symbol | |
|---|
| ID | 6285709 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010678 |
|---|
| Strand | - |
|---|
| Start bp | 532137 |
|---|
| End bp | 533612 |
|---|
| Gene Length | 1476 bp |
|---|
| Protein Length | 491 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 642618725 |
|---|
| Product | putative hemagglutinin-related transmembrane protein |
|---|
| Protein accession | YP_001892766 |
|---|
| Protein GI | 187926421 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.415076 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAGA ATATCAAGTG CCTGGCCGCC ACCATGGCAA GCCTGTTGGT TTTGGGTGGT
TGCGCCAGCT CCGGCTCAGG AGACATGGGC AGCTCGCTGG GCGGCTCGAA CGGCGGCGGC
TCGAACAACA ACGGCGGATC AACACCAACG CCTTCGCCCT CCCCGTCGCC TTCGCCGTCG
CCTTCGCCCT CTCCTTCGCC TTCGCCGTCC CCCAGCCCGA CTCCGGCACC TGCGCCGCTG
ACGCCGACCG GCGCCGTCCT CAACAATGCA GGGGGCATCG TCACGGCGGC CGGCTCGACT
GTGAGCGGCC TCGGCAAGAC CATCGCCACC GCGCCGCTGC CCTCGCAGCT GAGTGGCGTG
CAAAGCGGCT TGGGCGGTGT GGTTGAAAGC GCTGGCGCGA CGGTTTCGGC GCTGGGCACG
GGCGTACAGA ACGGGTTGGG CAGCATCGGC CGCAACACCA ATCCGGTTGG CACCACCGTT
TCCAGCCTCG GGAACGTGGT GACCGGTGCG GGCAACACGG TCACGAGCGC CGGCACGCTG
GTCAACAACC TGGGCACCGG TCCGCTGGCG CCGCTGGCTC CAGTGACAAC ACCGCTGGCA
GGCGTGGTCA CGCAAGTCGG CCAGGCTGTT GCCAACGGCG GCGGCACGCT GGGCACGGCC
CTGTCGACCG GCCCGGTGGA GCAGCTCACG CAGCAACTGA GCACGGCCAT CGTGCCGCTG
ACGTCGCAGA TCACCAGCGG CACACAGACG CTGGGCGCGG CCACGGGTCT GGGTTCCCCG
GCAAACTCAC TGCTGGGCAC GATTGGCGGC GCGGTGGCCA ATGGCGGTAC GACCCTCACC
GCTGCCAACG TTCCGGTTGT CAGTGGTCTC GGTGGCGTGG TGACGGCCGC AGGCACCACG
GTTGCCGCGC TGGGCGGCGC TGTGTATTCG CCGACGGCCT CGGGCGGTAA TCCGCTGGCC
CCGATCACAG GCCTGCTGGG CGGCCTGGGT GGCGCAACGG GCGGCAGCAA CCCGCTCGCT
CCGATCACTG GCGCACTCGG TGGCCTCGGC GGCGCTGGTG GCACCAACCC GCTGGCGCCA
ATTACAGGCT TGCTGGGCGG CCTGGGTGGC GCGACGGGCG GTAGCAACCC ACTTGCTCCG
ATCACCGGTG CACTCGGTGG CCTCGGCGGC GCTGGTGGCA CCAACCCGGT GGCGCCGATT
ACGGGCTTGC TGGGCGGCCT GGGTGGCACG CCAGGTGGTA GCAACCCGCT TGCTCCGATC
ACCGGTGCGC TCGGTAGCCT GGGCGGTGCA GCCGGTGCTG CCAGCAACCC GCTGGGGCCC
ATCAGTGCGA TCACGGCCCC GGTTGGCGGT GTGGTCACCA CGGTGGGCAC CGGCCTGACG
TCAGCAGGTG CGGCAACACC GCTGTCTCCG GTCACCGGCG CGGTGGGTGG TCTGCTGGGT
ACGGTGGGCA CCACACTAGG CGGCACGCGC CACTGA
|
|---|
| Protein sequence | MNKNIKCLAA TMASLLVLGG CASSGSGDMG SSLGGSNGGG SNNNGGSTPT PSPSPSPSPS
PSPSPSPSPS PSPTPAPAPL TPTGAVLNNA GGIVTAAGST VSGLGKTIAT APLPSQLSGV
QSGLGGVVES AGATVSALGT GVQNGLGSIG RNTNPVGTTV SSLGNVVTGA GNTVTSAGTL
VNNLGTGPLA PLAPVTTPLA GVVTQVGQAV ANGGGTLGTA LSTGPVEQLT QQLSTAIVPL
TSQITSGTQT LGAATGLGSP ANSLLGTIGG AVANGGTTLT AANVPVVSGL GGVVTAAGTT
VAALGGAVYS PTASGGNPLA PITGLLGGLG GATGGSNPLA PITGALGGLG GAGGTNPLAP
ITGLLGGLGG ATGGSNPLAP ITGALGGLGG AGGTNPVAPI TGLLGGLGGT PGGSNPLAPI
TGALGSLGGA AGAASNPLGP ISAITAPVGG VVTTVGTGLT SAGAATPLSP VTGAVGGLLG
TVGTTLGGTR H
|
|---|
| |