| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4241 |
|---|
| Symbol | |
|---|
| ID | 6285708 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010678 |
|---|
| Strand | - |
|---|
| Start bp | 530185 |
|---|
| End bp | 531930 |
|---|
| Gene Length | 1746 bp |
|---|
| Protein Length | 581 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642618724 |
|---|
| Product | Polypeptide-transport-associated domain protein ShlB-type |
|---|
| Protein accession | YP_001892765 |
|---|
| Protein GI | 187926420 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2831] Hemolysin activation/secretion protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.398994 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.613369 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACGCG CGGCTGCACG GCTTCGCGAC ACTACAAACG AAATCACGGA GGAGACAGGC
GTGCGGACCA CCACCATGCG GTTGGCCCTG GCCACAGGCG TAGCACTGAC CGGCCCGGCA
CTGAGCTGGG CCCAGAGCAG CCCCACTCAA GGCAACCCGA TCGACACGCT TCCCAAGGTC
GATACCTCCC GTCCGCCCCA GCAGAAGATC CAGGTGGAAG TGCAGCGGCC GAATCCGGCA
CTGGAAAACC TGCTCGCCAC GCATCTCACA CCGACCAAGT TCCAGATCGA AGGCGTCAAG
ACGCTGCCGT TTCCCGAGGT CGCTGCGCAT TTCGCGCCGC TGGCCGGGCA CGACGTGACC
GTCGCGCAAC TGCTGCAGGC CGCCAACGAT GTCACCAAGC TGTATGCCGA CCGCGGTTTC
CCGCTCTCAT TTGCTTTCGT GCCGGCACAA ACGTTTGAAG GCGGTGTCGT GCGCGTCACC
GTGGTCGAAG GCTATGTGGC GCGCATGCGT ATCGAGGGCA CACCCGGGCC ACTGGCAGAC
CGCCTGCGAG AAATCTCGCA GCGCCTGATG AATGAGAAGC CCCTGCGCCG CGAAACGTTC
GAGCGCGTCA CCGGCGTGCT GGCGCTGCAA CCCGGCGTGC AGATCACCGC GACTGTGCAG
CCGCCCACCA CCACCGATGG TGCGAGCGAA CTCGTGTTGA ACGTGAAGCG CCAGCCGTAC
ACGATCGGCA CGGGCATCGA ATACCGTTCG CCGGGTGTGC GGGCCATCAT TACGGGCACG
CTCAATAGCG TGACGCCGCT GGGCGAGCAG ATCACCGTCT CGACGCTGCA ACCGCGCGGG
TCGGATCATG AGACGTTCTA CTCGGCCTCG TGGGCTCAGC CAATCGGCAC CGACGGGCTG
CTGGCCAAGC TCACGTGGTC GCACTATCGC GGCATGCCCG AGAATCTGCC GCTGGAGCAA
CTGGGCTATC AATCGCGCTA CCTGACCGAC ACGCAACGGC TCGGGTTGTC ATTGAGCTAT
CCGGTACTGC TGTCGAACAC GCGCAACCTG ATGGTGACGG GCACCTTCTA CGGCAACGAC
GACAAGCAGC GCTACAACCC GCAAGTCACC ACGCTCCCGC AAACTGAGCT GGATACCAAA
GTCCGCGTGG CCGGCGCCGA GGTGCTCTAT ACCGAAATCA ACCCGGGCGA GACTCGACGT
GCGTCGTTGG GCTTATACCA AGGCATCAAT AGCTTGGGCG CCGGCAAGGC CGCCTCGTCC
AACGCCAAAA ACGATGTTGA CCTGAGCTTC CTGCGCACGC GCGTCACCGC CAGCGAAGCC
CACGACTTGC CCCTGGGCTT TGGCGTGGTG GTGTCGGGGG CAGCGCAGTA CAGCGGCGCG
GTGCTTCCAT CGTCGGAGCA GATCAGCTTT GGCGGACGCT TCTTCGGTCT CGCCTATCCG
GCCGGTGAAG TGGCAGGTGA TCGCGGCTGG GGCGCATCGG TGGAAATCAA CCGCGCATTC
CAGGTATCGA TGGACTATCT GAAGACCGTG CAACCTTACC TGCTGTACGA CACCGCAAAG
GTCTATTCGA ACGCAGGCAC GCTGGTGCAT GATCAGCTCG GCTCGATTGC CCTGGGCGTG
CGCTTCTCCG ATCGGAAGTA CTACACGCTG GACTTGGCCA TCGCGCGTCC CGTGGGAGAC
AAGCCGATCA ACTCAAGCTC GCGCAGCCTG CGGTTCAACG CCGCCTACAC GTACCAGTTC
AACTGA
|
|---|
| Protein sequence | MERAAARLRD TTNEITEETG VRTTTMRLAL ATGVALTGPA LSWAQSSPTQ GNPIDTLPKV
DTSRPPQQKI QVEVQRPNPA LENLLATHLT PTKFQIEGVK TLPFPEVAAH FAPLAGHDVT
VAQLLQAAND VTKLYADRGF PLSFAFVPAQ TFEGGVVRVT VVEGYVARMR IEGTPGPLAD
RLREISQRLM NEKPLRRETF ERVTGVLALQ PGVQITATVQ PPTTTDGASE LVLNVKRQPY
TIGTGIEYRS PGVRAIITGT LNSVTPLGEQ ITVSTLQPRG SDHETFYSAS WAQPIGTDGL
LAKLTWSHYR GMPENLPLEQ LGYQSRYLTD TQRLGLSLSY PVLLSNTRNL MVTGTFYGND
DKQRYNPQVT TLPQTELDTK VRVAGAEVLY TEINPGETRR ASLGLYQGIN SLGAGKAASS
NAKNDVDLSF LRTRVTASEA HDLPLGFGVV VSGAAQYSGA VLPSSEQISF GGRFFGLAYP
AGEVAGDRGW GASVEINRAF QVSMDYLKTV QPYLLYDTAK VYSNAGTLVH DQLGSIALGV
RFSDRKYYTL DLAIARPVGD KPINSSSRSL RFNAAYTYQF N
|
|---|
| |