| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4239 |
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| Symbol | |
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| ID | 6285700 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010678 |
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| Strand | - |
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| Start bp | 526408 |
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| End bp | 528495 |
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| Gene Length | 2088 bp |
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| Protein Length | 695 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642618722 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001892763 |
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| Protein GI | 187926418 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATAACG ATTTCCATAT TGCGCTGCTG CTGTTTGCGT GGGTCAGCAC TGGGCTGACC
ACGTTTGCCG CACTGGACGC TGCGACACGT CTGCCGGGGG GCTCGACGAT CGCAAAACGC
CGCAACTGGC GCATCGCCTG TGCGGTCATT CTTGGCATTG GGCTGTGGGC GGGGCTTTGG
CTCGGCCAGC TCGGCCTGCA TCGGCAGGTC GGTGCGGCCG TATCCGCGCC CATTGTGGCG
ACACTCATGA CAGCGCTGGC GGCCTCGCTG GCGGCTTTCT CCATCGTGTT GCCGGACACT
TCGGCTTCCA ATGGCGCACA GGCTCCGCAA CGACGCAGCA TTGCCATGGG CGCCGTGGCG
CTTGCCATCG GCCTGTTGAC GATGGAGCTG TATATGACAC GCCCCTGGGT GCATGACCAG
GCATTGTCGC TGCGCCGCGC CGTGCTTGGC TGGGGCGGCG GCACGCTGGT GCTTGGTGCA
GGCGTGTGCT TGGCGATGTG CATGGCATTT CATATGCCGC CCGCGCAGCG CCGCGCCGCC
GTGGGTCTGC GCGCACGTGC CGCAGCCGTG CTGGCGACAA CTGCGGTGCT ATCGCTCGTG
CTGTGGCCGT GCGCCGCCGC TTGGCCGGCC GATGAATCAA CGATGCATAT CGTGCCCGTC
ATCATGCTCA GCGCCGGCGG CGTGTTGATC GCACTGGGCC TGCACGCGGT GCTGATGATG
CTCGAGACCC GTGTCGACTC GGCGCAGGCG CACCTGGAAG CTTCGCTGGC GCGCGTGGCA
AACCAGACGC CCCGGCCCCA ACTCCACGAC GCGCTGACCG GCCTGCCGAA CCGCCTGCAT
CTGCGCGAAG CGCTGGAGGC GGCAATCCTG TCGTCCACGC GACGCGGGCG TCCGTTTGCT
CTCTTCTATC TGGATCTCGA CAATTTCGGG CAGATCAACG ACCAATACGG CCGCAACGCC
GGTGACCGTG TGCTGCAAAT CATTGCCGAG CGCCTGCGCC AGGCGATTCG CGGCGAAGAC
ACCGTGGCAC GCCTTGGCGG CGACGAATTC GGCATCCTCG TTGAAGGTCT GGCGCTGCCC
GAGTCTGCCG CCACCATTGG CGACAAGCTG CTGTTCCGCC TGCGTGAATC GGTGGAAGTG
GAAGGCCGGC GCCTGCGCGC GACCGCCAGC ATTGGCGTAG TCGTTCATCC TCACAACGGT
GCGACGGCAG ACACGCTGCT TGAACATGCC GACACGGCCA TGTTCGATTG CAAGCAATCC
ACCGGCAACG CCTACCGCTT CTTCGAGCCG CGCCTGAACA CCACGGCACA CCGCGTGCTG
CAGATCCAAC GTGCGCTCTC GCATGCGGCC CTCAACGGGC AGCTCTCCGT GTACTACCAG
CCAAAGTACG ACGCGCGCAC GCAGGCCATG GCCGGCGCCG AAGCACTTCT GCGCTGGAAC
CACCCGGAGC TTGGCCCGGT GTCGCCAGCG GAGTTCATCC CGTTGGCCGA ACGCACCGGC
ACCATCGTCG AACTGGGCGA CTGGGTGGTC GAAGAAGTCT GTCGCCAGAT CATGCACTGG
GATGCCATCG GCATGGCGCC GCAGCGCATT GCCGTCAACC TCTCGCCAAG GCAATTCCAG
CAACCCGATC TCGTGCAGCG TCTGTCGCAG ATCCTGCATC GCTATCAGGT TGCCGCACAT
CGGTTGATGT TCGAGATCAC CGAAACCGCG GCCATGCGCG ATGCGAGCCA AAGCATCGCG
GTCATCCGTC AGATCCAGTC GCTCGGCTTC GAGGTGGCCA TTGACGATTT CGGGACCGGT
TATTCCAGCC TCAGTTATCT GCAGCGATTT CGCGCCCAGC AGATCAAGAT CGATCGCGCA
TTCGTCTCCG CGCTCGATGA CAATCCGCCC GAGGCAGCCG CCATCATTCG CGCCATTTGC
GCGATGGCGC ACTCGCTGGA CATGACCGTG GTGGCGGAAG GCGTGGAAAC CGAAGCGCAA
ATGCAGGCCC TGGTGAATCT GCAATGCGAC CAGGTTCAGG GCTATCTGCT GGCGCGTCCG
ATGCCGGCCA AGGATTTTCA AGGGTTGCTT GGAGTCGAGT ACGCCTGA
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| Protein sequence | MHNDFHIALL LFAWVSTGLT TFAALDAATR LPGGSTIAKR RNWRIACAVI LGIGLWAGLW
LGQLGLHRQV GAAVSAPIVA TLMTALAASL AAFSIVLPDT SASNGAQAPQ RRSIAMGAVA
LAIGLLTMEL YMTRPWVHDQ ALSLRRAVLG WGGGTLVLGA GVCLAMCMAF HMPPAQRRAA
VGLRARAAAV LATTAVLSLV LWPCAAAWPA DESTMHIVPV IMLSAGGVLI ALGLHAVLMM
LETRVDSAQA HLEASLARVA NQTPRPQLHD ALTGLPNRLH LREALEAAIL SSTRRGRPFA
LFYLDLDNFG QINDQYGRNA GDRVLQIIAE RLRQAIRGED TVARLGGDEF GILVEGLALP
ESAATIGDKL LFRLRESVEV EGRRLRATAS IGVVVHPHNG ATADTLLEHA DTAMFDCKQS
TGNAYRFFEP RLNTTAHRVL QIQRALSHAA LNGQLSVYYQ PKYDARTQAM AGAEALLRWN
HPELGPVSPA EFIPLAERTG TIVELGDWVV EEVCRQIMHW DAIGMAPQRI AVNLSPRQFQ
QPDLVQRLSQ ILHRYQVAAH RLMFEITETA AMRDASQSIA VIRQIQSLGF EVAIDDFGTG
YSSLSYLQRF RAQQIKIDRA FVSALDDNPP EAAAIIRAIC AMAHSLDMTV VAEGVETEAQ
MQALVNLQCD QVQGYLLARP MPAKDFQGLL GVEYA
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