| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4223 |
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| Symbol | |
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| ID | 6285672 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010678 |
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| Strand | - |
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| Start bp | 505450 |
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| End bp | 506982 |
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| Gene Length | 1533 bp |
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| Protein Length | 510 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 642618706 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_001892747 |
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| Protein GI | 187926402 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00337155 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCGCGG GCCGCTGGAC TCCGCTGGCG CTGGCCGCCG CGCTGTTCCT CGCGGCCTGC
TCGCTCGCCC CGACCTACGA GAAGCCGGAC GTTGGCACGC CCAACGCCTT CAAGGAAGCT
GCGCAGCCTG CGCAGGCGAC CGATGCACCG CTGGCGGCAA ACGAGCAAGG CAAGTGGAAA
ACCGCCGAGC CCGCCCTGCC CGCCGATGGC GCGTGGTGGA AGATCTTCAA CGACCCGACG
CTCGACAAGC TCGAAGCGCA GGCCGCTGAA GCCAGCCCCA CGCTGGCCGC CGCCGCCGCC
CGCGTGACGC AGGCGCGCGC CTTCGTGCAG GCCAACCGTG CATCGCTGTT CCCGGAACTG
GACGTGGGCT TCGGCCCGAC GCGCCAGCGG GCGTCGGCGG CATCGGCCGG CTTGCCGGTC
GGCGCGCCCG TGCAGCCGCA GACGTACTGG CGCGCGCAGT CCACCGTGGC GTATGAGGTC
GACCTGTTCG GCCGCGTGCG CAACAACATC GATGCCGCCG GTGCCGACGC CGAGCGCGTC
GAGGCGCTGT ACCGTGCCGC ACGGCTGACC TTGCAGGCCG ACGTGGCGCA GACGTATTTC
AGCCTGCGCA CGCTGGACGC GGAAGAAGCC TTGCTGTCCC GCACGCTGGT CGGCCGTGAA
GAGGCGCTCA AGCTCGTGCA GCGCCGCTTC AACACCGGCG ACATCGGCGA GCTGGACGTC
GCCCGCGCTG ATGCCGAACT GGCCACGGCA CGCTCCGACC GCATCGGCGT ACAGCGCCGT
CGCGCGGTGC TCGAGCACGC ACTGGCAACG CTGCTGGGCA AGGCACCGGC CGATTTCACG
ATGGGCGCAG ACCCGCTGCA ATCGGCCGAA GTGCGCGTAC CGGCGGGCCT GCCCTCCGCC
CTGCTGGAAC GCCGCCCCGA CGTGGCCGCT GCCGAACGCT CGATGGCGGC TGCAAACGCA
CGCATTGGCG TGGCGCGCGC GGCGTTCTTC CCGCAACTGC AGCTCACGGG CGGCTTCGGC
TACGAGTCGC ACGACATCGG CGACCTGCTC AAGTGGGGCA GCCGCACGTG GATTCTCGGC
CCGCTGGTCG GCACCGCGCT GTCGCTGCCG ATCTTCGACG GTGGCGCCCG CAGCGCCGGC
GTGAAGCAGG CCCGTGCCGC GTATGAAGAG AACGTCGCCA ACTACCGCGA AAGCGTGCTC
GTCGCCTTCC GCGAGGTGGA AGACAACCTC TCGGAACTGC GTCTGCTGGC CGATCAGGCC
AAGGCACAGG ACGACGCCGT GCGCGCTTCC ACGCGCGCCG CGCAACTCTC GCGCACGCGC
TACAACGCGG GGTCGGTCAA CTACCTGGAC GTGATCGATG CCGAGCGCAA CATGCTGTCC
GCCGAACGCA TCGGCGTGCA GCTGGCCGGC AGCCGCGTGA ACTCCACGGT GGGGCTCATC
AAGGCGCTGG GCGGTGGCTG GGGGGATCTG CCGCCGGCTG CACCGGCTAA CGCAGCCACC
GCGGCCCAGC CCGCAACGGT GGCGCAACAG TAA
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| Protein sequence | MRAGRWTPLA LAAALFLAAC SLAPTYEKPD VGTPNAFKEA AQPAQATDAP LAANEQGKWK
TAEPALPADG AWWKIFNDPT LDKLEAQAAE ASPTLAAAAA RVTQARAFVQ ANRASLFPEL
DVGFGPTRQR ASAASAGLPV GAPVQPQTYW RAQSTVAYEV DLFGRVRNNI DAAGADAERV
EALYRAARLT LQADVAQTYF SLRTLDAEEA LLSRTLVGRE EALKLVQRRF NTGDIGELDV
ARADAELATA RSDRIGVQRR RAVLEHALAT LLGKAPADFT MGADPLQSAE VRVPAGLPSA
LLERRPDVAA AERSMAAANA RIGVARAAFF PQLQLTGGFG YESHDIGDLL KWGSRTWILG
PLVGTALSLP IFDGGARSAG VKQARAAYEE NVANYRESVL VAFREVEDNL SELRLLADQA
KAQDDAVRAS TRAAQLSRTR YNAGSVNYLD VIDAERNMLS AERIGVQLAG SRVNSTVGLI
KALGGGWGDL PPAAPANAAT AAQPATVAQQ
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