Gene Rpic_4128 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_4128 
Symbol 
ID6285531 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010678 
Strand
Start bp397763 
End bp399235 
Gene Length1473 bp 
Protein Length490 aa 
Translation table11 
GC content65% 
IMG OID642618615 
Productdrug resistance transporter, EmrB/QacA subfamily 
Protein accessionYP_001892656 
Protein GI187926311 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.422777 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.15166 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGGCTG CGTCGCACAT CTGCCGGTTC TGCCCCCGCC CCATGCCCAC CACGCCCTCC 
GCCTCCCTCG ACACCTCTCT GAAACCGTTG CTCTGGCTGG TGGCGATGGG ACTGTTCATG
CAGACGCTCG ATTCCACGAT CGTCAACACC GCGTTGCCGG CCATGGCACG CAGCCTGTCG
GAAAGCCCGC TGAAGATGCA GTCGGTCATC ATCGCCTACA CGCTGACGAC CGCCATGCTG
ATGCCTGCGT CGGGATGGCT GGCCGATCGC TTCGGCACGC GGAAGATGTT CTTTGCTGCC
ATCTTTCTCT TCACCATTGG TTCCTTGCTC TGCGCGGAGT CCCGCAGCCT GACCATGCTG
ATTGCCTCGC GCGTGGTGCA GGGTGTGGGC GGCGCGCTGC TGATGCCCGT GGGGCGGCTG
ACGGTGCTGC GCGTGGTGCC GCGCGAGCAG TTCTTGCCGG CCATGAGTTT CGTCACCATC
CCCGGGCTGA TCGGCCCGCT GATCGGCCCG ACGCTGGGGG GCTGGCTGGT GGAAGCCGTG
TCGTGGCACT GGATCTTCCT GATCAACATT CCCGTGGGCG TGATCGGCGC GCTGGTCACG
CTCAAGGTGA TGCCCGATGT GCACGCAGAA GACGACAGCC GCTTCGACTG GTCCGGCTAT
CTGATGCTGG CCTTCGGCAT GGCGGCGGTA TCGTTTTCGC TCGACGGGCT GTCGGAGCTC
GGCTTCCAGC ACGCGACGGT GCTGGTGCTG CTGGTCTTCG GTCTGGCCGC ACTCACCGCC
TATTGGCTGC ACGCGGGGCG TGTGGCCGGG CCGCTGTTTC CGCGCACGCT GTTCGGTATT
CCGAGCTTTT CCATTGGTGT GCTCGGCAAC CTGTTTGCAC GCATCGGCAG CGGCGGGATG
CCGTTCCTCA TTCCGCTGCT GCTGCAGGTG AGCCTGGGGT ACACGCCGCT GCAGGCGGGG
CTGATGATGG TGCCGGTGGC CGCAGCCGGC ATGGCCGCCA AGCCACTGGG CACCTGGGCC
ATCAAGCGCT ACGGCTATCG CCGCATGCTG TCCGTCAACA CGGTCATGGT CGGCCTGATG
ATGGCCAGCT TTGCCGTGAT GACGCCCAAC GTGCCGGTGT GGCTGCGCAT CGTGCAACTG
GCGATCTTCG GCACGTTCAA CTCGATGCAG TTCACGGCCA TGAACACGCT CACGCTCAAG
GACCTGACGG GCCCCCTGGC CAGCGCGGGC AACAGCATGC TCTCGATGGT GATGATGCTG
TCGATGAGCC TGGGCGTGGC CGCAGCCGGC GCGTTGCTGA CGGGCTTTAC CGACTTCACC
GCCGGACCGG AAGGGCGCGA CACGCTGGCG GCGTTCCACA AGACGTTTGT CTGCGTGGGC
GTCATGACCT GCGCGGCTGC GTGGATCTTT GCCCAGCTCT CGCGCTTCGA GTCAACGCAC
GTCGTCAAGC GGCCCGAGAT GGAAGTGCAT TGA
 
Protein sequence
MTAASHICRF CPRPMPTTPS ASLDTSLKPL LWLVAMGLFM QTLDSTIVNT ALPAMARSLS 
ESPLKMQSVI IAYTLTTAML MPASGWLADR FGTRKMFFAA IFLFTIGSLL CAESRSLTML
IASRVVQGVG GALLMPVGRL TVLRVVPREQ FLPAMSFVTI PGLIGPLIGP TLGGWLVEAV
SWHWIFLINI PVGVIGALVT LKVMPDVHAE DDSRFDWSGY LMLAFGMAAV SFSLDGLSEL
GFQHATVLVL LVFGLAALTA YWLHAGRVAG PLFPRTLFGI PSFSIGVLGN LFARIGSGGM
PFLIPLLLQV SLGYTPLQAG LMMVPVAAAG MAAKPLGTWA IKRYGYRRML SVNTVMVGLM
MASFAVMTPN VPVWLRIVQL AIFGTFNSMQ FTAMNTLTLK DLTGPLASAG NSMLSMVMML
SMSLGVAAAG ALLTGFTDFT AGPEGRDTLA AFHKTFVCVG VMTCAAAWIF AQLSRFESTH
VVKRPEMEVH