Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_4120 |
Symbol | |
ID | 6285513 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010678 |
Strand | - |
Start bp | 389701 |
End bp | 391278 |
Gene Length | 1578 bp |
Protein Length | 525 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642618607 |
Product | spermidine synthase |
Protein accession | YP_001892648 |
Protein GI | 187926303 |
COG category | [R] General function prediction only |
COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.139425 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.076368 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGACGC CGCAGCCTGA CGCCACATAC GAACCTACGC AGCCTTCGGG CCGCGGCAAT GCCTTGCTGG TCCTCGCCGT CTTTGTGGTG GCCTCGTGCG GGCTCGCTTA CGAATTGATT GCCGGGGCAT TGGCTTCGTA CCTGCTGGGC GATTCCATCC TGCAGTTCTC TTCCATCATC GGCGCCTATC TGTTTGCGAT GGGCATCGGC TCGTGGCTCT CGCGCTACGT GGCCGATGAC GCGCTGCTTG CCCGCTTTGT CGATCTGGAA TTGCTGGTCG GGCTGTTTGG CGGCGTGTCT GCCGCGGCGC TGTTTGCGTT GTTTGCGCTG GAATCGGCGC CGTTCCGCCT GGTGCTGTAC GCGCTGGTGA CGGTGATCGG CGTACTGGTC GGCATGGAGA TCCCGCTGGT GATGCGCATG CTGCATCGGC GGCAGGCAAA GTTCTCCGAT CTCGTCAGCC GCGTGCTGAC GTTCGATTAC CTTGGCGCGC TGGCGGTGTC GCTGCTGTTT CCGCTGGTGC TGGCGCCGCG CCTGGGGCTG GTGCGCACCG GCTTCCTGTT CGGCCTGTTC AATACCGCGA TTGCGGTCTG GACGCTCTGG CACTTCCGCG CCGAGCTGGC GCTTTCGGCC CGCATGCGTA CCGCGATGGC GTGGCGCGCC GGCGCGGTAG CGGCAGCATT GCTCGCGGGC TTTGGCGCGT CAGACAAGCT CACGCACTGG TCGGAGCGCG CGCTCTTTGG CGACGAGATC ATCCACGCGA TTTCCTCGCC GTATCAGCGG CTGGTCGTCA CGCGCTGGAA AGACGACCTG CGCCTGTACA TCAACGGCAA CCTGCAGTTT TCCTCGCGCG ACGAATACCG CTATCACGAG GCGCTGGTGC TGCCTGCGCT CGAAGCCGTG CGCGGTGCGC GGCGCGTGCT GGTGCTGGGC GGCGGCGACG GACTCGCGCT GCGGCAGATC CTGAAGTACC CGCAAATCGA GCACGTCACG CTGGTCGACC TGGACCCACG CATGACGAAC CTGTTCTCGC ACGCCGAGGC ATTGGTTGCG CTCAATCAGC ATGCGTTCAG TGACCCGCGC GTGACGGTGG TCAACGCCGA TGCTGCGCAA TGGATGCAGA CCGCCACCGA CATGTTCGAT GTGGCCATCG TCGATTTTCC GGACCCGTCC AACTTCAGCA TCGGCAAGCT GTATTCGGTG CCGTTCTATC GACTGCTGTC GCGCCATGTG GCGGATACGG GCCTGGTTGT CATTCAAGCC ACGTCGCCCT ATTTCGCGCC GCGTTCGTAC TGGTGTGTGG ATGCGACGCT GAAGGAAGCC GGTTACCGCA CGTGGCCGTA CCACGCGCTG GTGCCGTCCT TTGGTGAATG GGGCTTCATC CTGGCCGCAC CGGGCCGCGC GGATTTCCAG CCACCCGCCT CGTACCGCGT GCCGACACGC TTTCTGGATG CCGACACCAC GCATCAGATG TTCAGCTTCG CGCCCGACAT GCCGCGCCCG AAAGTAGAGC CGAACCGGCT GAACAATCAA TCGCTGGTGC GGTATTTCGA AGAAGACTGG CACGGCGTGC TGCGCTGA
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Protein sequence | MSTPQPDATY EPTQPSGRGN ALLVLAVFVV ASCGLAYELI AGALASYLLG DSILQFSSII GAYLFAMGIG SWLSRYVADD ALLARFVDLE LLVGLFGGVS AAALFALFAL ESAPFRLVLY ALVTVIGVLV GMEIPLVMRM LHRRQAKFSD LVSRVLTFDY LGALAVSLLF PLVLAPRLGL VRTGFLFGLF NTAIAVWTLW HFRAELALSA RMRTAMAWRA GAVAAALLAG FGASDKLTHW SERALFGDEI IHAISSPYQR LVVTRWKDDL RLYINGNLQF SSRDEYRYHE ALVLPALEAV RGARRVLVLG GGDGLALRQI LKYPQIEHVT LVDLDPRMTN LFSHAEALVA LNQHAFSDPR VTVVNADAAQ WMQTATDMFD VAIVDFPDPS NFSIGKLYSV PFYRLLSRHV ADTGLVVIQA TSPYFAPRSY WCVDATLKEA GYRTWPYHAL VPSFGEWGFI LAAPGRADFQ PPASYRVPTR FLDADTTHQM FSFAPDMPRP KVEPNRLNNQ SLVRYFEEDW HGVLR
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