Gene Rpic_4120 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_4120 
Symbol 
ID6285513 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010678 
Strand
Start bp389701 
End bp391278 
Gene Length1578 bp 
Protein Length525 aa 
Translation table11 
GC content64% 
IMG OID642618607 
Productspermidine synthase 
Protein accessionYP_001892648 
Protein GI187926303 
COG category[R] General function prediction only 
COG ID[COG4262] Predicted spermidine synthase with an N-terminal membrane domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.139425 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.076368 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGACGC CGCAGCCTGA CGCCACATAC GAACCTACGC AGCCTTCGGG CCGCGGCAAT 
GCCTTGCTGG TCCTCGCCGT CTTTGTGGTG GCCTCGTGCG GGCTCGCTTA CGAATTGATT
GCCGGGGCAT TGGCTTCGTA CCTGCTGGGC GATTCCATCC TGCAGTTCTC TTCCATCATC
GGCGCCTATC TGTTTGCGAT GGGCATCGGC TCGTGGCTCT CGCGCTACGT GGCCGATGAC
GCGCTGCTTG CCCGCTTTGT CGATCTGGAA TTGCTGGTCG GGCTGTTTGG CGGCGTGTCT
GCCGCGGCGC TGTTTGCGTT GTTTGCGCTG GAATCGGCGC CGTTCCGCCT GGTGCTGTAC
GCGCTGGTGA CGGTGATCGG CGTACTGGTC GGCATGGAGA TCCCGCTGGT GATGCGCATG
CTGCATCGGC GGCAGGCAAA GTTCTCCGAT CTCGTCAGCC GCGTGCTGAC GTTCGATTAC
CTTGGCGCGC TGGCGGTGTC GCTGCTGTTT CCGCTGGTGC TGGCGCCGCG CCTGGGGCTG
GTGCGCACCG GCTTCCTGTT CGGCCTGTTC AATACCGCGA TTGCGGTCTG GACGCTCTGG
CACTTCCGCG CCGAGCTGGC GCTTTCGGCC CGCATGCGTA CCGCGATGGC GTGGCGCGCC
GGCGCGGTAG CGGCAGCATT GCTCGCGGGC TTTGGCGCGT CAGACAAGCT CACGCACTGG
TCGGAGCGCG CGCTCTTTGG CGACGAGATC ATCCACGCGA TTTCCTCGCC GTATCAGCGG
CTGGTCGTCA CGCGCTGGAA AGACGACCTG CGCCTGTACA TCAACGGCAA CCTGCAGTTT
TCCTCGCGCG ACGAATACCG CTATCACGAG GCGCTGGTGC TGCCTGCGCT CGAAGCCGTG
CGCGGTGCGC GGCGCGTGCT GGTGCTGGGC GGCGGCGACG GACTCGCGCT GCGGCAGATC
CTGAAGTACC CGCAAATCGA GCACGTCACG CTGGTCGACC TGGACCCACG CATGACGAAC
CTGTTCTCGC ACGCCGAGGC ATTGGTTGCG CTCAATCAGC ATGCGTTCAG TGACCCGCGC
GTGACGGTGG TCAACGCCGA TGCTGCGCAA TGGATGCAGA CCGCCACCGA CATGTTCGAT
GTGGCCATCG TCGATTTTCC GGACCCGTCC AACTTCAGCA TCGGCAAGCT GTATTCGGTG
CCGTTCTATC GACTGCTGTC GCGCCATGTG GCGGATACGG GCCTGGTTGT CATTCAAGCC
ACGTCGCCCT ATTTCGCGCC GCGTTCGTAC TGGTGTGTGG ATGCGACGCT GAAGGAAGCC
GGTTACCGCA CGTGGCCGTA CCACGCGCTG GTGCCGTCCT TTGGTGAATG GGGCTTCATC
CTGGCCGCAC CGGGCCGCGC GGATTTCCAG CCACCCGCCT CGTACCGCGT GCCGACACGC
TTTCTGGATG CCGACACCAC GCATCAGATG TTCAGCTTCG CGCCCGACAT GCCGCGCCCG
AAAGTAGAGC CGAACCGGCT GAACAATCAA TCGCTGGTGC GGTATTTCGA AGAAGACTGG
CACGGCGTGC TGCGCTGA
 
Protein sequence
MSTPQPDATY EPTQPSGRGN ALLVLAVFVV ASCGLAYELI AGALASYLLG DSILQFSSII 
GAYLFAMGIG SWLSRYVADD ALLARFVDLE LLVGLFGGVS AAALFALFAL ESAPFRLVLY
ALVTVIGVLV GMEIPLVMRM LHRRQAKFSD LVSRVLTFDY LGALAVSLLF PLVLAPRLGL
VRTGFLFGLF NTAIAVWTLW HFRAELALSA RMRTAMAWRA GAVAAALLAG FGASDKLTHW
SERALFGDEI IHAISSPYQR LVVTRWKDDL RLYINGNLQF SSRDEYRYHE ALVLPALEAV
RGARRVLVLG GGDGLALRQI LKYPQIEHVT LVDLDPRMTN LFSHAEALVA LNQHAFSDPR
VTVVNADAAQ WMQTATDMFD VAIVDFPDPS NFSIGKLYSV PFYRLLSRHV ADTGLVVIQA
TSPYFAPRSY WCVDATLKEA GYRTWPYHAL VPSFGEWGFI LAAPGRADFQ PPASYRVPTR
FLDADTTHQM FSFAPDMPRP KVEPNRLNNQ SLVRYFEEDW HGVLR