| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4070 |
|---|
| Symbol | fliA |
|---|
| ID | 6285420 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010678 |
|---|
| Strand | + |
|---|
| Start bp | 342782 |
|---|
| End bp | 343543 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642618559 |
|---|
| Product | flagellar biosynthesis sigma factor |
|---|
| Protein accession | YP_001892600 |
|---|
| Protein GI | 187926255 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
|---|
| TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0910892 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGAAG CGTCAAAGGC AGGCATGGAT ATGTACACCG CAACCGGTCG CAAGACCAAG
TCCGACGAGA TGGCCACGTA CGCACCCCTG GTGCGCCGCA TTGCCAACCA GATGATGGTC
AAGCTGCCGG CCAGCGTTGA GCTGGACGAC CTGATCCAGG CCGGCATGAT GGGCTTGCTC
GATGCGCTGT CGCGCTATGA GGAAACGCAG GGCGTGCAGT TCGAGTTCTA CGCGGCCCAG
CGTATTCGCG GCGCGATCCT GGACGAACTG CGCGGCTCGG ATTGGCTGCC GCGCGGCCTG
CGCCGCAACG CGCGCACGAT CGAGCAGGCA ATCCAGAAGC TGCAGCAGCA GAAGGGCCGC
GCGCCCACCG AAACCGAGAT TGCCGTAGCG CTGGGCATGT CGCTGGCCGA ATATCAGAAG
CAACTGGTCG ACCTGCAAGG CAGCCAGTTG CTGTATTACG AAGATTTCGA CCGTGAAGAC
GCTGACGCCT TCATCGAGAA CCGCGCACCC GAGAACGACG CCACGCCGCT GGACCAACTG
CTAGACCACG ACCTGCGCGA ATCGGTTGTC GCTGCCATCG AGGGACTGCC CGAGCGCGAG
AAGCTGATGA TGAGCCTCTA CTACGAGCAG GATCTGAACC TGCGTGAAAT CGGCGCCGTG
ATGGGCGTGT CGGAATCGCG CGTGTGCCAG ATCCACAGCC AGGCGATTGC CCGCATCCGT
TCGCGCCTGC GCGATCGCGC ATGGCTGCCG ACGCCGACCT GA
|
|---|
| Protein sequence | MNEASKAGMD MYTATGRKTK SDEMATYAPL VRRIANQMMV KLPASVELDD LIQAGMMGLL
DALSRYEETQ GVQFEFYAAQ RIRGAILDEL RGSDWLPRGL RRNARTIEQA IQKLQQQKGR
APTETEIAVA LGMSLAEYQK QLVDLQGSQL LYYEDFDRED ADAFIENRAP ENDATPLDQL
LDHDLRESVV AAIEGLPERE KLMMSLYYEQ DLNLREIGAV MGVSESRVCQ IHSQAIARIR
SRLRDRAWLP TPT
|
|---|
| |