Gene Rpic_3993 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_3993 
Symbol 
ID6285268 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010678 
Strand
Start bp261614 
End bp264247 
Gene Length2634 bp 
Protein Length877 aa 
Translation table11 
GC content68% 
IMG OID642618484 
Productprotein of unknown function DUF470 
Protein accessionYP_001892525 
Protein GI187926180 
COG category[S] Function unknown 
COG ID[COG0392] Predicted integral membrane protein
[COG2898] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.463704 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTGACG CCGCGTCCAA CGACGCCAGT CCAACATCGC GCCGATCTTC GGCCCGCACC 
CCGCCTGCCG CGCCCGCCAC GCCCGTGCGA TCCGAATCGG GCCTAGGCCT GGCCGGCTGG
ATCGTGGTCG GCATGGTGCT CGTGCTTGGC GCACTCGTGT TCGACAGCCT GTATGCGCTG
CTGGACCACG TGCACTACGC CGATATGGTC GCCGCGCTGC AGGCTACGCC GCGCTCGCAC
CTGCTGCTGG CCGTGCTGGC CACGGCGCTG AGCTACGTCG CCCTGACCGG CTACGACGCG
TCCGGCCTGC GCTATGCCGG CGCGCACGTC GCCCCAGGCA CGGTGGCCAC CACCTCGTTC
ATTGCTTATG CGCTGGGCAA CACCGTCGGT CTCGGTTCGC TGACGGCCGG GGCGGTGCGC
ACGCGCTTGT ACACGGCGGC CGGGCTCGAT CCTGCCCGTG TGACAGAAGC GGTCGCCTTC
GATGCGGGCG CGCTTGGCGT GTCCACCACG GCCTTTGGCG CGGTCGGGCT GCTGTGGGGC
GCGCCGCACA TCGCTACCAT TACGCATTTG CCGGCGCCGT TGCTCGAAGT CGTGGCCCTG
CTGGTGCTGG CCGGCGTCGT GGCGTTGCTC GTGCTGTGCA TGCGGCAGCG CCATGTGACG
CTGTTTGGCC GGTGGGAGGT CCGCCCGCCG CCGCCGGGCT TGGCCGCGCG TCAGTTTGCG
ATTTCAGCGG CCGACATGAT TGCCGCGGCG GCGGCGCTGT GGGTGCTGAT GCCGGCAGGC
GCGGTCGACC TACCGACGTT TGTGGCGTTC TATGCGCTGG CGGTCACGCT GGGCGTCCTG
AGCCAGAGCC CGGGCGGCCT GGGTGTGTTC GAGGCCGTCA TCCTTCTGGG CTGCAGCGGC
CAGGCGCCGC CGGCCGAGGT GCTGGCCGCG CTGCTGTTCT ACCGCGCCAT CTATTTCCTG
CTGCCACTGG TCGTGGCCGC TGCCATGCTT GGCGCCTTCG AGTTGCGCTC CGGCGCCGGG
GCACCGTTCG GCCGCGCTGC GGTCAAGTTG TCGCCGGGGC TGTTGGCCGC GCTGACGATG
GTGGCCGGCG TGATGCTGCT GGTCTCGGGC GTCACCCCTG CCAGCGACGA AGCGGAAGAC
CTCCTGCGCA TGCACGTGCC GCTGTTCGTG GTGGAAGCCT CGCACATGAT CGGTAGCGTG
GCGGGGCTCA TCATGCTGTT TGTCGCACGC GGGCTGCTGC ACCGGCTGGA TGCCGCGTGG
TGGGCGGCGC TGGTGCTGTC GCTGCTGACC GGCGTGCTGG CGCTGCCCAA GGGCATTGCC
GTGTCGGAGA TGGCGGTGCT GGTGACGCTG GCGGTGCTGC TCGTCATCTC GCGCCGGCAG
TTCGATCGGC CGTCGTCGCT GTTCTCGCAG CGGCTGGAGG CGGGGTGGCT GCTCGCCATG
GTGTGCGTGT TTGCGGCGTG CGTGTGGATT CTCTTCTTCG CCTACCGCGA GGTGGCCTAC
GCCAACCAGC TCTGGTGGCA ATTCACATTT GACGGCGATG CGCCACGTTC CATCCGCGCG
CTGATGGCCG TGGCCGTCAC CGGGCTCGGC TTCGGCATGT GGCAGCTCTT TCGCAAGGAG
CCAGGCGTTA CGACCTTCCC GAGCGACGAA GAACTCGCCC GCGCGGCCGA GATCGTCCGC
AAGCAGCCTG CCGCCGATGC CACGCTCGCG CTGATGGGCG ACAAGAGCCT GCTGTTCTCG
CCGTCGGGCA ACGCGTTCAT CATGTACGCC AAGCAGGGGC GCTCGTGGGT GGCGCTGTCC
GACCCCGTGG GCGCGCAGCA GGAGTGGCCC GAGCTGATCT GGCGCTTTAT CGAAATGGCC
GACGCGCATG GCGGGCGCGC CGCGTTCTAC AAGACGCGGC CGCAGACGCT GCCGCTGTAT
CTCGATGCCG GCCTGCGTGC CTACAAGCTG GGCGAAGAGG CGTATGTGTC GCTGCCCGAC
TTCAGCCTCA AGGGCTCGCG CCGCGCCAAT CTGCGCCATG GCGTGACGCG CGGCGAGCGC
GAAGGGCTGT CGTTCGAGAT CATCCCGACG GCAGACGTGC CGACCGTCCT GGACGAATTG
CGGGCCATTT CCGATGAATG GCTGCGCAAT CAGAACGCGC GCGAGAAAGG CTTCTCGCTC
GGCGCATTTG ACGACCGCTA CATCCGCAGC CAGCCCGTGG CCGTGGTGCG CCGCGAGGGC
GTCATCGTGG CGTTTGCCAC GCTGATGTGC CCCGATGTGC TGCGCATCGA GGCGAGCGTG
GACCTGATGC GCTATCGCAG CGACGTTCCG CCCGGCACGA TGGATTTCCT GTTTGGCAAG
GTCATCCTGC ACTTCCAGGC GCAGGGGTAT CAGCGTTTCG GGCTGGGCAT GGCGCCGATG
TCGGGCATGG TTGAGCATCA GCTTGCGCCG CGCTGGCACC GCTTCGGACG GATGATGTTC
CGGCACGGTG CGCGCTTCTA CAATTTCAGA GGGCTGCGCA ATTTCAAGGA CAAATTCGAG
CCGGTGTGGG AAGCCCGCTA CCTGCTCGCA CGTGGCGGTA TCGCGCCGCT GTTCACATTG
ACGGACGTCG CTGCGCTGAT CGGCGGCGGC TTGAAGGGAG TGATCTCCAA ATGA
 
Protein sequence
MPDAASNDAS PTSRRSSART PPAAPATPVR SESGLGLAGW IVVGMVLVLG ALVFDSLYAL 
LDHVHYADMV AALQATPRSH LLLAVLATAL SYVALTGYDA SGLRYAGAHV APGTVATTSF
IAYALGNTVG LGSLTAGAVR TRLYTAAGLD PARVTEAVAF DAGALGVSTT AFGAVGLLWG
APHIATITHL PAPLLEVVAL LVLAGVVALL VLCMRQRHVT LFGRWEVRPP PPGLAARQFA
ISAADMIAAA AALWVLMPAG AVDLPTFVAF YALAVTLGVL SQSPGGLGVF EAVILLGCSG
QAPPAEVLAA LLFYRAIYFL LPLVVAAAML GAFELRSGAG APFGRAAVKL SPGLLAALTM
VAGVMLLVSG VTPASDEAED LLRMHVPLFV VEASHMIGSV AGLIMLFVAR GLLHRLDAAW
WAALVLSLLT GVLALPKGIA VSEMAVLVTL AVLLVISRRQ FDRPSSLFSQ RLEAGWLLAM
VCVFAACVWI LFFAYREVAY ANQLWWQFTF DGDAPRSIRA LMAVAVTGLG FGMWQLFRKE
PGVTTFPSDE ELARAAEIVR KQPAADATLA LMGDKSLLFS PSGNAFIMYA KQGRSWVALS
DPVGAQQEWP ELIWRFIEMA DAHGGRAAFY KTRPQTLPLY LDAGLRAYKL GEEAYVSLPD
FSLKGSRRAN LRHGVTRGER EGLSFEIIPT ADVPTVLDEL RAISDEWLRN QNAREKGFSL
GAFDDRYIRS QPVAVVRREG VIVAFATLMC PDVLRIEASV DLMRYRSDVP PGTMDFLFGK
VILHFQAQGY QRFGLGMAPM SGMVEHQLAP RWHRFGRMMF RHGARFYNFR GLRNFKDKFE
PVWEARYLLA RGGIAPLFTL TDVAALIGGG LKGVISK