| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3975 |
|---|
| Symbol | |
|---|
| ID | 6285232 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010678 |
|---|
| Strand | + |
|---|
| Start bp | 238959 |
|---|
| End bp | 240506 |
|---|
| Gene Length | 1548 bp |
|---|
| Protein Length | 515 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642618466 |
|---|
| Product | methylmalonate-semialdehyde dehydrogenase |
|---|
| Protein accession | YP_001892507 |
|---|
| Protein GI | 187926162 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01722] methylmalonic acid semialdehyde dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCCG TTGCCTCTCT CGCTTCCGCC AAGCCTGCCG CACAGCAGGA CACCCCGCCC
ACCGTCAAGC TGCTGATCGG CGGCGAGTTT GTCGAATCGC AGTCGAAGGA ATGGCGCGAC
ATCGTGAACC CCGCCACGCA GGAAGTGCTG GCGCGCGTGC CGTTTGCCAC GGCCGGCGAA
GTGGATGCAG CCATCCGCTC CGCACATGCT GCGTTTGCCA CGTGGAAGAA CACGCCAGTC
GGTGCGCGCA TGCGCATCAT GCTGAAGTTC CAGGCGCTGA TTCGCGAGCA CTCGCCGCGC
ATTGCCCGCA CGCTGACGGC CGAGCAGGGC AAGACGCTGC CCGATGCCGA AGGCGATATC
TTCCGCGGGC TGGAAGTGGT GGAGCACGCG TGCTCGGTGG GCTCACTGCA GCAGGGCGAG
TTTCTGGAGA ACGTGGCCGG CGCGGTCGAC ACCTACACGC TGCGCCAGCC GATTGGCGTG
TGCGCCGGCA TCACGCCGTT CAACTTCCCG GCCATGATTC CGCTGTGGAT GTTTCCGATG
GCGATCGTGT GCGGCAACAC GTTCGTGCTC AAGCCGTCGG AGCAGGATCC GCTGTCGACC
ATGCAACTGG TGGAACTGGC CCTTGAAGCA GGTGTGCCGC CCGGCGTATT GAACGTCGTG
CATGGCGGCA AGGACGTGGT CGATGCACTG TGCACGCACG AACACGTGAA GGCGATTTCG
TTTGTGGGCT CGACCGCAGT GGGCACGCAT GTTTACCGCC TGGGCAGCGA GCACGGCAAG
CGCGTGCAAT CGATGATGGG CGCCAAGAAC CACGCCGTGG TGCTGCCCGA CGCGAACCGC
GAGCAGGCCA TCAATGCGCT GGTGGGTGCG GCCTTCGGCG CGGCGGGGCA ACGCTGCATG
GCGACCTCCG TCGTCGTGCT GGTGGGCGCT GCGCAGCAGT GGGTGCCGGA CCTGATCGCC
AAGGCAAAAA CGCTCAAGGT GAATGCCGGT GTCGAGCCGG GTACCGATGT CGGCCCCGTC
GTCTCGCGTG CCGCCAAGCA ACGCATTCTC GGCCTGATCG AATCGGGCGT GCAGCAGGGC
GCCACGCTGG CGCTCGACGG CCGCAATGTG CGCGTGGCCG GCTACGAAGA CGGCAACTTC
ATCGGCCCGA CGATCTTCAC CGACGTGAAG ACCGACATGG ACATCTACAC CAACGAAATC
TTCGGGCCCG TGCTGCTGGT GCTGACTGTG CCTACGCTGG ACGACGCCAT TGCGCTGGTC
AACGCTAACC GGTTCGGCAA CGGTGTGGGC CTGTTCACGC AGAGCGGCGC ATCAGCACGC
AAGTTCCAGA GCGAGATCGA CGTCGGGCAG GTCGGTATCA ACATTCCGAT TCCGGTGCCG
GTGCCGTACT TCAGCTTTAC CGGCTCGCGC GGCTCCAAGC TCGGCGATCT GGGCCCGTAT
GGCAAGCAGG TCGTGCAGTT CTATACGCAA ACGAAAACGG TAACGGCGCG CTGGTTTGAC
GACGCGGTCG ACACCGGCGG CGTCAACACC ACCATCAGCC TGCGCTGA
|
|---|
| Protein sequence | MSAVASLASA KPAAQQDTPP TVKLLIGGEF VESQSKEWRD IVNPATQEVL ARVPFATAGE
VDAAIRSAHA AFATWKNTPV GARMRIMLKF QALIREHSPR IARTLTAEQG KTLPDAEGDI
FRGLEVVEHA CSVGSLQQGE FLENVAGAVD TYTLRQPIGV CAGITPFNFP AMIPLWMFPM
AIVCGNTFVL KPSEQDPLST MQLVELALEA GVPPGVLNVV HGGKDVVDAL CTHEHVKAIS
FVGSTAVGTH VYRLGSEHGK RVQSMMGAKN HAVVLPDANR EQAINALVGA AFGAAGQRCM
ATSVVVLVGA AQQWVPDLIA KAKTLKVNAG VEPGTDVGPV VSRAAKQRIL GLIESGVQQG
ATLALDGRNV RVAGYEDGNF IGPTIFTDVK TDMDIYTNEI FGPVLLVLTV PTLDDAIALV
NANRFGNGVG LFTQSGASAR KFQSEIDVGQ VGINIPIPVP VPYFSFTGSR GSKLGDLGPY
GKQVVQFYTQ TKTVTARWFD DAVDTGGVNT TISLR
|
|---|
| |