| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3939 |
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| Symbol | |
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| ID | 6285139 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010678 |
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| Strand | - |
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| Start bp | 193691 |
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| End bp | 197281 |
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| Gene Length | 3591 bp |
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| Protein Length | 1196 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642618430 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_001892471 |
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| Protein GI | 187926126 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGAGA CCAAGTCGCC CAAACCCGCC ACTTCACGGA AAACCACGGC CGCATTGAAG
GCGGCCAAGC CACCCGGCAG CAAAGCCAAA TCGGCAACCA AGCCGACAGC GATGCCGAGC
GAACGCCCGC CAGCTGCGAC GCAGCCCCCG TATGCCCCGG CCATCTGCTA CGTGCATCCG
CTGCAACTCG GCAGGCTCGA CCGCTGGGAC GGCGTGCTCG ATCGCATTGC TTCATTGGGC
TTTGATCATG TGTTGATGGC CCCGCCGTTT GCGGTGGGTG CGGCCGGCAA CGTCTTCGTC
ACGCGAGACC ATGCGCAACT GCATGCCGCA TTGGGCGGTG GGCCGGCCGA CGCCGCCCTC
GCCACCCTGG CCGAAGGCTG CCGCGCGCGC GGGCTTACGT TGCAGCTCGA TCTGGTGATC
GACCGCGTGG CCATTGATGC GCCGCTGCGT GCCGACCACC CCGACTGGTT CGCCAGCCAC
GCCGAAGACG GCGACGCGCT CGACCCACGC CTGCCGCCGT CGCACCTGGA GGTCGCCTCC
TTCCGACACG ACGACCCGCG CTGCGCCGAC GCCATCCTGA TGTGGTGGAC GCAGCAGTTG
CGTGCGTGGG CCGCATTGGG CATCGGCGGG TTCCGCTGCG AAGCGCCTGC ACGCCTGCCA
GCGGCACGCT GGCGCACATT GATTGCCGAC GTGCGCAAAG ACGTTGGCGT CATACGCTTC
CTGGCGTGGA CGCCCGGCAT GGATGGCGCA GCGGTCGATG CGCTGGCAGG TGCCGGCTTT
GACGCAACGT TCTCGTCGCT GCGCTGGTGG GATTTCCGCG CCGGTTGGAT GGTGGAAGAG
CACGCCCGCC TGGCTGCCGT GGCCCCGCCC ATCGCCGCAG TGGAAGCACC GTTCGGCACG
CGCTACGGCC AGGCATTTGG CGACGCGATG ATCCGCGAAC GCGCCTACCG CCGTCTCCTG
CACGTGGCCG ACACGCTCGA TGCCGGCTGG CTGATGCCGC TGGGCTTCGA ACGCGGCGCA
CTGCTGCCGA TGCTGGCCGA GCGCGGTGAC CCATCCGACC AGCAATGGAT TGACGCGCAC
GCCGCGTTTG ACCTGAGCGA CGCGGTGCGC GATGTGAATG CGACCATCCG CGCCGCACGC
GAGACGAACA CCGTCGCACC ACATGCCGAA CTGCGCATGC TGACCGGCCC AGACGCACCC
GCCACCGCCC TCTTGCGCGC CGATGGCCCG GACCTGCGCG CAGGCGATGC CGCCACGCTG
ACGGTCATCA ACCCCGACCT GTACATGGGT GTGTCGGTGC ATGCCGACCA CTTTCTGCCC
GGCGTGGCCG GCGGCTTTAC GCGCGGCGTA GCGCTCGATC TGTTGACGGA GCCCGTCGGC
AGTTGCGACG ACACGCTGCG CGCCCGGGCA CGGCCCTTGG CCGAGATCGA TTTGCTGCCC
GGCGACGTGC AGGTCTGGCG CGTGTTCCGC AATGCTCCGG TGCGCACTCC CGCAGCGGTC
AAACCGGCCA AGAGCCTGCG CACCAAGGCC GGCGAAGCGA AGGAACCTGT CAACGCTGCC
ATTGCCTCGC CGCGCATCGG CATCGAACAG GTGCAGCCCT CCGTTGAAGA CGGACGCTTT
GCCGTGAAGC GCCTGGTGGG CGATGACATC ATCGTCGAGG CCGATGTGCT GATGGACGGG
CACGACAAGT TGGCCGTGCA CCTGCTGTGG CGCGCGCAAG ATGAAGACAC GTGGCAGCAC
GTACCGATGA TGCCGCTGGG CAACGACCGC TGGCGTGGCG CGTTCCGGCC CGAGCGGCTG
GGGCGGCACG TGTACGCCGT GGCCGCTTGG CGCGACGCGT TCGGCACCTA CCGGTCCGAA
CTGGAGAAGA AGCACACCGC CGGCGTGGAG GTGACGCTGG AGCTGGAAGA AGGCGCGCGG
CTCGTCGCAC TGGCGGCCGA GCATGCGCCC AACGACGCAC CGGTCGACGC GCTGCACAAG
CTGGCCCGCC TGTTGGCGGA GGCAGACCAG GCGCACCGGC TCAAGCTATT GCTCGACCCG
GTGACCGAGC ACGTGATGGC GCAGGCCTCG CACTACCGGC CGTTCTATGT CGAAAGCGTG
GCGTACCCGC TCGACGTGGA ACGCGCTGGC GCGGCATTCG CCAGCTGGTA CAAACTGTTC
CCCCGCTCGG CATCGGACGA TGAACAGCGG CATGGCACGT TCGACGATGT GATCCGCCGC
TTGGGCGCCA TTCGCGGCAT GGGCTTCGAC GTGCTGTATT TCCCGCCCAT CCACCCCATC
GGCCGCACGA ATCGCAAAGG CCGCAACAAC AGCCTGCGCG CGGAGCCCGA CGACCCCGGC
AGCCCATACG CCATTGGTGC CACCGAAGGC GGGCACGACG CCATCCACCC GCAGCTCGGT
ACGCTGGAAG ACTTCCGCCG CCTGATGCGC GCCGCGCGTG AGAAGGGCCT GGAGCTGGCA
CTGGACTTTG CCATTCAATG CTCGCCCGAC CACCCCTGGC TGCGCGAGCA CCCCGGGTGG
TTTGCATGGC GCCCAGACGG CAGCATCAAA TACGCAGAGA ACCCGCCCAA GAAGTACGAA
GACATCGTCA ACGTCGACTT CTATGCCGAC GACGCCAAGC CCGGCCTGTG GACCGCACTG
CGCGATGTGG TGATGTTCTG GGCCGACGAG GGCGTGCGCC TGTTCCGCGT CGACAATCCA
CACACCAAGC CGCTGCCGTT CTGGGAATGG ATGATCGGCG AGGTGCGTGC GCGCTATCCG
GATACGGTGT TCCTGTCGGA AGCCTTTACG CGCCCCAAGG TGATGTACCG GCTGGCGAAG
GTGGGCTTCT CGCAGTCGTA CACGTACTTC ACGTGGCGGC ACACCAAGCA GGAATTCATC
GATTACCTGA CCGAGTTGAC GCGCACGCCG GTGCGTGAGT ATTTCCGCCC GCACTTCTTC
GTCAACACGC CCGACATCAA CCCGGTGTTC CTGCAGACAT CGGGGCGGCC GGGTTTCCTG
ATTCGTGCAG CGCTGGCGGC CACGCTGTCC GGCCTGTGGG GCGTCTATAA CGGCTTCGAG
CTGTGCGAAG GCGCTGCGGT GCCCGGCAAG GAGGAGTACC TCGACTCCGA GAAGTATCAA
CTGCGCGCGT GGGACCACAA CCGCCCCGGC AACATCGTCA AAGAGATTGC GCTGCTCAAC
CGCATCCGCC GGGCCAATCC GGCGCTGCAC TCGCACCTGG GCGTGACGTT CCAGCCCGCC
TCGGGCGACC GGATCCTGTT CTTCAGCAAA TCGACGCCGC CCGTGCTGCC GGCGCAGCTG
GAAACCTCGC AGGCCGAACC GGCCAACGCC CTGTCGCCGG ATCGCTTTGG AGACAACACG
GTGTTCGTGG CGATCAACCT CGACCCGCAC CACGCGCACG AATCCGACAT CGAACTGCCA
CTGTGGCAAT GGGGCCTGCC CGACCACGGC GCGCTGATGG CCGAGAACCT GGTCAACGGC
CAGCGCACCG TGTGGCGCGG CAAGTGGCAG CACATCCGTC TTGAACCCGA GCATCCGTTT
GCCATCTGGC GCGTGCGCCC GGCCCTGCCA TCGGAGGAAC AACCGTCATG A
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| Protein sequence | MPETKSPKPA TSRKTTAALK AAKPPGSKAK SATKPTAMPS ERPPAATQPP YAPAICYVHP
LQLGRLDRWD GVLDRIASLG FDHVLMAPPF AVGAAGNVFV TRDHAQLHAA LGGGPADAAL
ATLAEGCRAR GLTLQLDLVI DRVAIDAPLR ADHPDWFASH AEDGDALDPR LPPSHLEVAS
FRHDDPRCAD AILMWWTQQL RAWAALGIGG FRCEAPARLP AARWRTLIAD VRKDVGVIRF
LAWTPGMDGA AVDALAGAGF DATFSSLRWW DFRAGWMVEE HARLAAVAPP IAAVEAPFGT
RYGQAFGDAM IRERAYRRLL HVADTLDAGW LMPLGFERGA LLPMLAERGD PSDQQWIDAH
AAFDLSDAVR DVNATIRAAR ETNTVAPHAE LRMLTGPDAP ATALLRADGP DLRAGDAATL
TVINPDLYMG VSVHADHFLP GVAGGFTRGV ALDLLTEPVG SCDDTLRARA RPLAEIDLLP
GDVQVWRVFR NAPVRTPAAV KPAKSLRTKA GEAKEPVNAA IASPRIGIEQ VQPSVEDGRF
AVKRLVGDDI IVEADVLMDG HDKLAVHLLW RAQDEDTWQH VPMMPLGNDR WRGAFRPERL
GRHVYAVAAW RDAFGTYRSE LEKKHTAGVE VTLELEEGAR LVALAAEHAP NDAPVDALHK
LARLLAEADQ AHRLKLLLDP VTEHVMAQAS HYRPFYVESV AYPLDVERAG AAFASWYKLF
PRSASDDEQR HGTFDDVIRR LGAIRGMGFD VLYFPPIHPI GRTNRKGRNN SLRAEPDDPG
SPYAIGATEG GHDAIHPQLG TLEDFRRLMR AAREKGLELA LDFAIQCSPD HPWLREHPGW
FAWRPDGSIK YAENPPKKYE DIVNVDFYAD DAKPGLWTAL RDVVMFWADE GVRLFRVDNP
HTKPLPFWEW MIGEVRARYP DTVFLSEAFT RPKVMYRLAK VGFSQSYTYF TWRHTKQEFI
DYLTELTRTP VREYFRPHFF VNTPDINPVF LQTSGRPGFL IRAALAATLS GLWGVYNGFE
LCEGAAVPGK EEYLDSEKYQ LRAWDHNRPG NIVKEIALLN RIRRANPALH SHLGVTFQPA
SGDRILFFSK STPPVLPAQL ETSQAEPANA LSPDRFGDNT VFVAINLDPH HAHESDIELP
LWQWGLPDHG ALMAENLVNG QRTVWRGKWQ HIRLEPEHPF AIWRVRPALP SEEQPS
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