Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_3938 |
Symbol | |
ID | 6285137 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010678 |
Strand | - |
Start bp | 190200 |
End bp | 193694 |
Gene Length | 3495 bp |
Protein Length | 1164 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642618429 |
Product | trehalose synthase |
Protein accession | YP_001892470 |
Protein GI | 187926125 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases [COG3281] Uncharacterized protein, probably involved in trehalose biosynthesis |
TIGRFAM ID | [TIGR02456] trehalose synthase [TIGR02457] trehalose synthase-fused probable maltokinase |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.278548 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGCGCA ATCCGACCGC GCTGCTGGTG GACGACGCGC TCTGGTACAA GGACGCCGTC ATCTATCAGC TGCATGTCAA ATCGTTCTGC GATTCCGACA ACGACGGCGT CGGGGACTTC CCCGGGTTGA TCTCCAAGCT CGACTACATT GCCGAGCTGG GGGTGGACGT CATCTGGCTG CTCCCGTTCT ATCCGTCACC GCGCCGCGAC GACGGCTACG ACATCGCTGA ATACCGCGGC GTCCACCCCG ATTACGGCAA CATGGCCGAC GTGCGCCGCT TCATTGCCGA AGCGCATGCG CGGGGCCTGC GCGTGATCAC GGAACTGGTC ATCAACCACA CGTCCGATCA GCACCCGTGG TTCCAGCGTG CGCGGCGCGC CAAGCCGGGC TCTGCGCTGC GCGACTTCTA CGTGTGGTCC GACAACGACA AGAGGTACGC CGGCACGCGC ATCATCTTCA TCGATACCGA GCCTTCAAAC TGGACGTGGG ACCCGGTGGC CAACGCCTAT TACTGGCACC GCTTCTACTC GCACCAGCCC GATCTCAACT TCGACAACCC GCGCGTGCTC AAGGCAGTGA TCGGCGTGAT GAAGTTCTGG CTCAATCTGG GCGTGGATGG TCTGCGGCTC GATGCCGTGC CGTATCTCGT GGAACGCGAA GGCACGTCGA ACGAGAACCT GCCCGAGACA CACGAAGTGC TGCGCAAGAT TCGCGCGGCC ATGGATGGGG AATTCAAGAA CCGCCTGCTG CTGGCCGAGG CCAACCAGTG GCCGGAAGAC ACGCAGGAAT ACTTCGGTGC CGGCGACGAA TGCCACATGG CGTTCCACTT TCCGCTGATG CCGCGCATGT ACATGGCGAT CGCGCGTGAA GACCGTTTTC CGATCACCGA CATCATGCGC CAGACGCCGG AGGTGCCCGC CGGCTGCCAA TGGGCCATCT TCCTGCGCAA TCACGACGAA TTGACGCTCG AAATGGTGAC CGATGCCGAG CGCGACTACC TCTGGGAGGT CTACGCAAGC GACCGCCGCG CGCGCCTGAA CCTGGGCATC CGCCGCCGGC TGGCACCGCT GCTGGAACGC GACCGCCGCC GCGTCGAGCT GATGAACAGC CTGCTCTTCT CCATGCCCGG CACGCCCGTC ATGTATTACG GCGACGAAAT CGGCATGGGC GACAACATCC ACCTCGGCGA CCGCGACGGC GTGCGCACGC CAATGCAGTG GTCCCCCGAC CGCAACGGCG GCTTCTCGCG CGCCGACCCC GAACAGCTCG TGCTGCCGGC CATCATGGGC TCGCTGTACG GCTATGAATC GGTGAACGTG GAAGCGCAGA GCCGCGACGC GCATTCGCTG CTGAACTGGA CGCGCCGGCT GCTTGCCACG CGCAAGCGGC ATCGCGTGTT CGGCCGGGGT TCCATCCAGT TTCTGCAGCC GTCCAACCGC AAGGTGCTGG CGTATATCCG CGCGCTCGAA GGCGAAGCGC CGATCCTGTG CGTGGCGAAC CTCTCCCGCG CCTCGCAGGC TGTGGAGCTG GATTTGTCCA CCTTTGCGCA GCGGGTGCCG GTGGAGCTGA TTGGCGGGAC GGCGTTTCCG CCCATCGGCC AGTTGTCGTA TCTGCTCACG CTGCCGCCCT ACGCCTTCTA TTGGCTGGAG CTGCGCGAGA ACGAGCCTGG CCCGACCTGG TCGCAACCGG CTGCCGAGCA ATTGCCCGAG TTCACGACGC TGGTGCTGCG CGCAGGGCTG GATGCCCTGG CCGATACGCG ACAGCGCGAG GCACACCGCC AGTTGATCGA ACGCGAAATC CTGCCAACCT ATCTGCCCAA GCGCCGCTGG TTTGCCGCCA AGGACAGTGT GCTGCGTAGC GCAAAGTTTG CCTGGGGCGC CCCCGTGCCG GTGGATGCCG CATCCACCAA CCGCCCGCTG GCCGGGGCAA CGCGGCCCGA GGTGTTCCTC AACGAAGTGG CCGTCACGCT GGGCAGCCCC GACGGCACCG AGCGCGTCGA GCGCTACCTG CTGCCGCTTT CCATCGCATG GGAATCGGCC ACGCTGCCGG CTCTGCCCAT TCAGCTCGCC CTGGCGCGCG TGCGGCGCGG CCGCCATGTC GGCTACCTGA CTGACGCCTT CACCACCGAG ACCTTCGCCC GGGCGCTGCT CACCAACCTC GTGCGCGGCA CCACGCTGGA AGCCAATGAC GGCACCGTGC ATTTCGAGCC TGAACCGAAC ATCGCAGAGC TGGCCGAACC TGCCGGGGCG CCTGAAGCCG GCAGCACACG GCCTGCGCCG CTGCCGCTGG CACCCGACAC GCCCATCCAG TGGCTGGCGG CCGAGCAATC GAACAGCTCG CTGGTGATTG GCGAGTCCGT TATCGTCAAG CTGATCCGCC GTATCGCAAC GGGCATCCAC CCCGAGGTGG AGATGACGCG ACACCTCACG CGCGTGGGCT ACGCCAACAC GGCGGCACTC ATCGGCGAAG TCTCTCACCA CGCTGCCGAC GGCGAACGCG CCACGCTGGC CGTCATGCAG AGCTTCGTTC CCAACCAGGG CGATGCCTGG ACGTGGGCAC TGGACTACCT GCGACGCACC ATCGACGAAC TGGCCGTGCA GATGGAAGGC GTGACCACGG GCGATGGTGA ATCGTCTCCG GTGGCGGTCT CGGAAGCGCG CGTGGATACC GACGAGGCGT TGGCCGGCTA CGTCAACTTC ATCGGCGTGA TCGGCACGCG GCTGGGCGAA TTGCATGCCG CGCTGGCGGC GCCCACCGAA GACCCGAACT TCGGCGCGCG CATTGCAGAT GCCGACGATG CCACCTACTG GATCGCCCGC GTGAGCGAGC AGCTGACCCG CGCGCATGAC AACCTGACGG CATGGCAACG GCAAAATCCC GACAGCGCAC GGCAACCCGA CGTGCAATGG CTGCTGTCGC AACACCAGGC GCTGCTCGAC GCCGCCCGCG CGCATGCCGA AAACGGCCTG GGCGCAACGC TCTCGCGCAT CCATGGCGAT TTTCACCTCG GCCAGGTGCT GGTGGCGCAG GGCGATGCCT TCCTGATCGA CTTTGAAGGC GAGCCCTCCC GCCCCGTGGA AGAACGCCGG CGCAAGACCA GCCCGCTGCG CGACGTGGCG GGGCTGATGC GCTCGCTCGA CTACGTGGTG GGCGCCATGC GTCAGGGCCC CGATCATGTG GCCGGGCCCG CGCAGGAGCG CCGCAACGTC CTGCTGGAGC GGTTCCGCGC TGCGTCCACC GAACGCTTCC TGGAGGCGTA TGCCGCTGCC ATTCGCGGGC CCGATCTGAA CGCGCTGGAT CAGCCCGTGG TCGACTTTCA CCTGCTCGAT CTTTTCCTGC TGGAAAAGGC CGCATACGAA GTCAACTACG AAGCGTCCAA CCGCCCGACC TGGCTGCCGA TTCCGCTGGA AGGCTTCACA CGCGTGGCAC GCCGCCTGCT GCATGCAGAG CCACCATCAC CCGCTGCAGA AGACCCGACG GGAGGCCCAC CGTGA
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Protein sequence | MTRNPTALLV DDALWYKDAV IYQLHVKSFC DSDNDGVGDF PGLISKLDYI AELGVDVIWL LPFYPSPRRD DGYDIAEYRG VHPDYGNMAD VRRFIAEAHA RGLRVITELV INHTSDQHPW FQRARRAKPG SALRDFYVWS DNDKRYAGTR IIFIDTEPSN WTWDPVANAY YWHRFYSHQP DLNFDNPRVL KAVIGVMKFW LNLGVDGLRL DAVPYLVERE GTSNENLPET HEVLRKIRAA MDGEFKNRLL LAEANQWPED TQEYFGAGDE CHMAFHFPLM PRMYMAIARE DRFPITDIMR QTPEVPAGCQ WAIFLRNHDE LTLEMVTDAE RDYLWEVYAS DRRARLNLGI RRRLAPLLER DRRRVELMNS LLFSMPGTPV MYYGDEIGMG DNIHLGDRDG VRTPMQWSPD RNGGFSRADP EQLVLPAIMG SLYGYESVNV EAQSRDAHSL LNWTRRLLAT RKRHRVFGRG SIQFLQPSNR KVLAYIRALE GEAPILCVAN LSRASQAVEL DLSTFAQRVP VELIGGTAFP PIGQLSYLLT LPPYAFYWLE LRENEPGPTW SQPAAEQLPE FTTLVLRAGL DALADTRQRE AHRQLIEREI LPTYLPKRRW FAAKDSVLRS AKFAWGAPVP VDAASTNRPL AGATRPEVFL NEVAVTLGSP DGTERVERYL LPLSIAWESA TLPALPIQLA LARVRRGRHV GYLTDAFTTE TFARALLTNL VRGTTLEAND GTVHFEPEPN IAELAEPAGA PEAGSTRPAP LPLAPDTPIQ WLAAEQSNSS LVIGESVIVK LIRRIATGIH PEVEMTRHLT RVGYANTAAL IGEVSHHAAD GERATLAVMQ SFVPNQGDAW TWALDYLRRT IDELAVQMEG VTTGDGESSP VAVSEARVDT DEALAGYVNF IGVIGTRLGE LHAALAAPTE DPNFGARIAD ADDATYWIAR VSEQLTRAHD NLTAWQRQNP DSARQPDVQW LLSQHQALLD AARAHAENGL GATLSRIHGD FHLGQVLVAQ GDAFLIDFEG EPSRPVEERR RKTSPLRDVA GLMRSLDYVV GAMRQGPDHV AGPAQERRNV LLERFRAAST ERFLEAYAAA IRGPDLNALD QPVVDFHLLD LFLLEKAAYE VNYEASNRPT WLPIPLEGFT RVARRLLHAE PPSPAAEDPT GGPP
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