| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3935 |
|---|
| Symbol | |
|---|
| ID | 6285119 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010678 |
|---|
| Strand | - |
|---|
| Start bp | 183167 |
|---|
| End bp | 185008 |
|---|
| Gene Length | 1842 bp |
|---|
| Protein Length | 613 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642618426 |
|---|
| Product | malto-oligosyltrehalose trehalohydrolase |
|---|
| Protein accession | YP_001892467 |
|---|
| Protein GI | 187926122 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
|---|
| TIGRFAM ID | [TIGR02402] malto-oligosyltrehalose trehalohydrolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0534162 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.77528 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCAC CCGCCCCCCG GTTTGCGCAC GACATGCCGT TCGGCGCCAC CGTCCTGGCT
GACGGCAACA CCCGCTTCCG GTTGTGGGCG CCCGACGCGA CCGCGGCCTG GATCGACATC
GACGACACGC GCGGCAACGA GTCCATTCGT ATGGACGCCG AACCCGACGG TTGGTACGCA
GCGGTGGCAC CCGTGGGCTC CGGCACGTGC TATCGGTACC GCCTCACCAA TCGAGACGGC
GTGACGCTGT CAGTGCCCGA CCCCGCCGCA CGCGCACAGT GGCAGGACAT ACCTGGCCCA
AGCCTTGTCG TTGATCCGCA GCGTTACCGC TGGCAGCACG CCGACTGGCA AGGGCGGCCC
TGGCACGAGA CGGTGCTGTA CGAACTGCAC GTCGGCGCGC TGGGCGGTTT CAAGGGTGTG
CGGGGGCGGC TGCCGGAACT GGCGCGGCTG GGCATCACGG CCATCGAGTT GATGCCGGTG
GCGGAATTTC CGGGCGCGCG CAACTGGGGC TATGACGGCG TGCTGCCCTT TGCGCCCGAC
GCCAGCTATG GCACGCCGGA CGACCTCAAG GCATTGATCG ACACCGCGCA CGGGCTCGGC
ATGATGGTGT TTCTCGATGT GGTCTACAAC CACTTCGGGC CGGATGGAAA CTACCTGCAC
CACTACGCGC GCAGCTTCTT CCGCGACGAT GTGCATACGC CCTGGGGCGC CGCCATCGAT
TTCCGCAAGC CGCAGGTGCG CGAGTTCTTC ATCCAGAACG CGTTGATGTG GCTGATGGAA
TATCGCTTTG ACGGCCTGCG GCTCGACGCC GTGCACGCCA TCACCGAGCG CGACTGGCTG
GGCGAACTCG CCGCCCGCGT GCGACTGTCG GCCGAGCCTG GCCGGCATGT GCATCTGGTG
CTGGAGAACG AGCACAACGC CGCATCGCTG CTGCGCGATG GCAACACCCA TGGCGACTTC
GATGCGCAGT GGAACGACGA CGGCCACAAC GTGCTGCATG TGCTTCTCAC CGGCGAGCGC
GAAGCCTATT ACGCAGCCTA TGCCGATGCG CCCGCGCAGC GCCTGGCGCG CGTGCTGCAA
GACGGCTTCT GCTACCAGGG TGAGCCGTCA CCCATCCATG ACAACGCGCC GCGCGGTGAA
CCAAGCGCGC ACTTGCCGCC CACCGCGTTC GTGCTTTTCC TGCAGAACCA CGACCAGATC
GGCAATCGTG CCTTTGGCGA ACGGCTGACG CAGCTTGCCC ACCCCGATGC GCTGCACGCC
GCGCAAGTGC TGTTGCTGCT GAGCCCGCAG ATTCCAATGC TGTTCATGGG TGAGGAATGG
GGCAGCACCT GCCCGTTCCA ATACTTCACC AGCCATCACG GCATGCTGGC CGAAGCCGTG
CGGGAGGGCC GCCGCAGGGA GTTTGCCAAG TTCGAGGCGT TTGCCGATCC GCACCAGCGC
GAGCGCATTC CCGATCCCAA CGAAGAGCTG ACCTACCTCG CCTCCTGCCC CGGCGAGGCG
AACCTGGCCG AACCCGCACA GCTCAACACA CTGAACCGCA TGCACCGCCT GCTGGCACTG
CGTCACGCAG AGATCATCCC GCGCCTGCCC CATGCGCGCG CGCTCGATGC GGTGGCGCTG
GGCCACGCCG GGGCCATTGC CCGCTGGCGC ATGGGCGATG GCAGCGTGCT CACGCTGATG
CTCAATCTGG CCGATCAACC CGTGGCGGTG CCCACGGTGC TGGCGGGCAG CCCAGCCGAT
CTGCTGCACG AATCGCGCGA GGGCGCCGCC GCCGCGCTCA TCACGCATCG CCTGCCGGAG
CGCGCGTGCG TGGCATTGCT GCACACGCCA TCACCCGGCT GA
|
|---|
| Protein sequence | MTAPAPRFAH DMPFGATVLA DGNTRFRLWA PDATAAWIDI DDTRGNESIR MDAEPDGWYA
AVAPVGSGTC YRYRLTNRDG VTLSVPDPAA RAQWQDIPGP SLVVDPQRYR WQHADWQGRP
WHETVLYELH VGALGGFKGV RGRLPELARL GITAIELMPV AEFPGARNWG YDGVLPFAPD
ASYGTPDDLK ALIDTAHGLG MMVFLDVVYN HFGPDGNYLH HYARSFFRDD VHTPWGAAID
FRKPQVREFF IQNALMWLME YRFDGLRLDA VHAITERDWL GELAARVRLS AEPGRHVHLV
LENEHNAASL LRDGNTHGDF DAQWNDDGHN VLHVLLTGER EAYYAAYADA PAQRLARVLQ
DGFCYQGEPS PIHDNAPRGE PSAHLPPTAF VLFLQNHDQI GNRAFGERLT QLAHPDALHA
AQVLLLLSPQ IPMLFMGEEW GSTCPFQYFT SHHGMLAEAV REGRRREFAK FEAFADPHQR
ERIPDPNEEL TYLASCPGEA NLAEPAQLNT LNRMHRLLAL RHAEIIPRLP HARALDAVAL
GHAGAIARWR MGDGSVLTLM LNLADQPVAV PTVLAGSPAD LLHESREGAA AALITHRLPE
RACVALLHTP SPG
|
|---|
| |