| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3920 |
|---|
| Symbol | |
|---|
| ID | 6285089 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010678 |
|---|
| Strand | - |
|---|
| Start bp | 163975 |
|---|
| End bp | 165468 |
|---|
| Gene Length | 1494 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642618413 |
|---|
| Product | peptidase dimerisation domain protein |
|---|
| Protein accession | YP_001892454 |
|---|
| Protein GI | 187926109 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.49046 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGGTG CCACTGGCCT GGCCGGCGCC GCTGAACTGT CTTCGGCAGA CGCCGAACGC
CATGCCCAGG CAACGTACCG CGAATACTTT CAACTGCTCT CCCTGCCCAA CGACGCCATC
GTGCCGGAGG ATGTCCGCAA GAATGCCGAT TGGCTGGAGC AGGCGTTCCG CAAGCGCGGC
TTCACAACAA AACAGTTGGC GAACAACGGC AAACCGATGC TCTACGCCGA GCTGCCGAAC
CCGGATGCCG GACGCAAGAC GGTGCTGTTC TACATGCACC TCGACGGCCA GCCAGTGATT
CCCGCGCAGT GGGCGCAGAA GAGTCCATGG ACGCCCGTGC TCAAGCACAA GACCGCACAA
GGCGACTGGG AAGAGATCGA CGCGGCGCAG CTTTTCAGCG GCCCACTGGA TCCGGAATGG
CGCGTATTCG GCCGATCGTC CGCCGACGAC AAGGGCCCGA TCATGATGAT GCTGGCCGCC
ATCGACGCAC TGAAGGCCAG CGGCGCCCAG CCGGCCGTCA ACGTCAAGAT CATTCTCGAC
AGCGAGGAGG AGAAAGGCTC GCCGTCGATC AGCAAGGTCA TGCAGGCAAA CCGCGAGCTG
CTGCGCTGCG ACGCCATCGT CATCCACGAC GGCCCCATGC ATGCGAGCAA CCTGCCAACG
CTGGTCTTTG GTAACCGCGG TGCAGCCGAA GCGAGGCTCA CCGTCTACGG GGCCAAGGTG
CCGCTGCACA GCGGGCACTA CGGCAACTAC GCCCGCAATC CGGCCCAGCA GTTGGCCAAC
CTGCTGGCAT CGATGAAGAA CGACGCGGGC CGCGTGACGG TGCCAGGCTA TTACGACCAC
GTGAAGATCA GCGAGGCCGA CCGCAAGATC ATGGCTGCCG TGCCCGACGA CCAGGCAGCG
CTCAACAAGC GCCTGGGCAT TGCGCATGCC GACAAGGTCG GGGCCAACTA CCAGGAAGCG
ATGCAGTACC CGTCATTGAA CGTGCGCGGC ATGGCCTCTG CAGCGGTGGG CGACAAGGTG
GCGAACATCG TGCCCGACAA GGCCGTCGCC GAACTGGACC TGCGAACCAC GCCAGACTCC
AGCGCGGCCT ACCTCGGCAA GCTGATCGAG CGGCACATCG AGCGCCAGGG CTACCACCTC
GTCAAGAACG CCCCGACCGA CGAAGAGCGC AGCCGCTACG ACAAGCTCGC CACGTTCACG
TATCAGAGCG AGGGCGCGGA TGCCGCGGGT TCACCGATCG ACTCGGCTGT GGGCACATGG
GCCTACAGGT CGCTGACCGA CACCTTTGGT GCGAACCCGG CGCCGGTCCG CATCCGCATG
ATGGGCGGGA CGGTGCCCAC GGCGGAAATC GTTGGCGTGC TGCAGGTGCC GTTCGCGATC
ATTCCTCTGG TCAATGCCGA TAACAACCAG CATGCCGCGA ATGAGAACCT GCGGATGGGC
AACTACGTGG GCGGCGTGCG GACGATCTAC GGCCTGCTGA CGCACCCGCT CTGA
|
|---|
| Protein sequence | MLGATGLAGA AELSSADAER HAQATYREYF QLLSLPNDAI VPEDVRKNAD WLEQAFRKRG
FTTKQLANNG KPMLYAELPN PDAGRKTVLF YMHLDGQPVI PAQWAQKSPW TPVLKHKTAQ
GDWEEIDAAQ LFSGPLDPEW RVFGRSSADD KGPIMMMLAA IDALKASGAQ PAVNVKIILD
SEEEKGSPSI SKVMQANREL LRCDAIVIHD GPMHASNLPT LVFGNRGAAE ARLTVYGAKV
PLHSGHYGNY ARNPAQQLAN LLASMKNDAG RVTVPGYYDH VKISEADRKI MAAVPDDQAA
LNKRLGIAHA DKVGANYQEA MQYPSLNVRG MASAAVGDKV ANIVPDKAVA ELDLRTTPDS
SAAYLGKLIE RHIERQGYHL VKNAPTDEER SRYDKLATFT YQSEGADAAG SPIDSAVGTW
AYRSLTDTFG ANPAPVRIRM MGGTVPTAEI VGVLQVPFAI IPLVNADNNQ HAANENLRMG
NYVGGVRTIY GLLTHPL
|
|---|
| |