Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_3890 |
Symbol | |
ID | 6285017 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010678 |
Strand | + |
Start bp | 140105 |
End bp | 140791 |
Gene Length | 687 bp |
Protein Length | 228 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 642618385 |
Product | ThiJ/PfpI domain protein |
Protein accession | YP_001892426 |
Protein GI | 187926081 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.440921 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGACTT CCCCATTCAT CGTTGTCTTT GCGCTGTACA ACCGTGTCAC CCAGCTCGAC TTCACCGGTC CGCATGAGGT GTTCTGGCGG CTGCCCGGCG CGCAATGCGT GGTGGCTTCC GCAGCCGGTG GTGAGATCCA TGCCGATGGC GGTCTCACCA TCTCGAACGT GCAGCGGTTG GCGGACATTC CGCATGCTGA CCTGATTTGC GTGCCCGGCG GTTTCGGCGT GATCGAAGCC ATGGAAGACG CAGAGTTCGT GCGCCAGGTG CGGCGCCTGG CCGACGGCGC GCGCTATGTC ACGTCCGTCT GCAGCGGCTC GCTCGTGCTG GGCGCGGCGG GGTTGCTGCA GGGCAAGCGC GCGGCCTGCC ACTGGGCATG GCGCAACCTG CTGCCCGCGT TTGGCGCCAC CGTGGACGAA GCCCGCGTGG TGCGTGACGG CAACCTCATC ACGGGCGGCG GCGTGACGGC CGGCATCGAC ATGGCGCTGA CGGTCATGGC CGACATTGCC GGCGCCGAAC ATGCGCAGGC CGTGCAGCTC GGTATCGAAT ATGCCCCCGC GCCGCCGTTC GATTGCGGCC GCCCCGAGCG TGCGGCACCG GAGATTCTCG AAGCGGTGAC GTCGCGGCTG GATCGTTTGC GTGCGGATCG CCATGACGCC GTGCAGCGGG CGGCGCAGCG CCTCTGA
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Protein sequence | MTTSPFIVVF ALYNRVTQLD FTGPHEVFWR LPGAQCVVAS AAGGEIHADG GLTISNVQRL ADIPHADLIC VPGGFGVIEA MEDAEFVRQV RRLADGARYV TSVCSGSLVL GAAGLLQGKR AACHWAWRNL LPAFGATVDE ARVVRDGNLI TGGGVTAGID MALTVMADIA GAEHAQAVQL GIEYAPAPPF DCGRPERAAP EILEAVTSRL DRLRADRHDA VQRAAQRL
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