| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3879 |
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| Symbol | |
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| ID | 6285000 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010678 |
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| Strand | + |
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| Start bp | 129908 |
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| End bp | 132079 |
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| Gene Length | 2172 bp |
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| Protein Length | 723 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642618375 |
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| Product | PTS system, lactose/cellobiose family IIC subunit |
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| Protein accession | YP_001892416 |
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| Protein GI | 187926071 |
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| COG category | [G] Carbohydrate transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG1455] Phosphotransferase system cellobiose-specific component IIC
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00410] PTS system, lactose/cellobiose family IIC component |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.877502 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGACGC AGGCGCTATC GCCCTGGCTG AGGTTGTTGA GCGCCGCTGA GCGCTTCGAC
CGCGGGCCGT ATTTCATTGC CATTCGGCGC GGGCTGGCGC TCTCGTTGCC GCTCATCATG
GTGGGCGCGG TGGCGCTGCT GTTGCGCAAC CCGCCCACCG CCGGCATGCG CCACCTGCTG
CTGGAGGCCT TTGGCACGCG GCTGGATGCC TTTTGCGACA GCGTGCTGGC CGGCACGATC
GGCATCGGCT CGCTGGTCGC GCTGTTCGGG TTTGCCGATG TGTTGGCGCA GTTACACAAC
CAGCGCGCCG GGCACCGCGT GGTCAACCCC ACCGTGGCGG CCGTGGTGGT GGTGTCGTGC
TTCTTTACGC TCATCGCGCC GGCTGCGAAC GCATCGTTGA TGGCGTGGCT CTCGCTGGGG
CAGGGGCTGT TTGGCGCGTT GGTGGTGGCG TCGCTGGGCG GCAGCCTGTT TCTCAAGCTG
TGCAGCATCC GCCGTTTGCG CATTCCGTCC CACCATTTGA GCAACGATCT GCTGGTGGGC
GATGTGCTGT CGGTTGTGCC GGCCGGCATG CTGACGATCC TGACGTTTGC CCTGCTCAAA
GCCGGCATGG CGTGGGCGGG CTGGCTGCAC TTCATGGCGA TAGTCGACCC GCTGCTGGCG
TGGCCGTATT CGGCAGTCTC CAATAGCCTG CTGTTTGGTT TGGGCTATGA GACGGCGGCG
CAGGTGCTCT GGCTGTTCGG CATCCACGGG CCGAACGCGC TGTACACGGT GCACCAGCAC
ATCCTGGAGC CCGCCGCGCA GGCCAATGCG GCGGCGGTTG CCAGTGGTGG CCAGCCGCCG
TTCATCTTTA CCTATCACTT CTTCGCGGTG TTCGCGCGCA TGGGCGGCTC AGGCGGCACA
CTCAGCCTGA TCTTGGCGCT GCTCATCTCC AGGCGCATGC AACGCGGCCG CAAGATGGCG
CTGGTCGTCA TGCTGCCGGC ATTGTTCAAC GTGAACGAGC CCCTGCTCTT CGGGCTGCCG
CTGGTGCTCA ACCCGGTCTA TGCGATTCCG TTCCTGCTCA CGCCGGTGGT GCAGATCCTG
ATCGCCTATG CGGCCACCGT TGCCGACCTG ATGCCCAAGA CCAGCTACCC CGTGGCGTGG
ACCACGCCGG CGCTGTTCAG CGGTTACGCG GCTACGGGCT CGGTGTGGGG GGCGGTGGTG
CAGCTCATCG GCCTGGTGGT GGGGGCGGCG ATTTACCTGC CGTTTGTCCG CATGGCGGAT
GTTCTGTCCG CACGGCGCAG TCAGGATGTG CTTGCGTCTT TGCTGCAGAT TGCGGAGTCG
GCGGAGGTGA GCCTGAAGGG CCGGCGCTGT CTGGACCTGC CGGGCGACGA AGGCCGCATG
GCGGTGGCGC TGGCCAGCGA CCTGGAAGAC GCCATCAAGA GAGAAGGGCA GATCTTTCTG
GAGTTTCAGC CGCAGGTGGA TTGCTCAACC GGGCGCGTGT TCGGCGCCGA GGCGCTGCTG
CGCTGGCAGC ATCCGGTGCT GGGGCGCGTG GCCTCGCCGA TCGTCGTGGC GCTGGCTGAT
GACATTGGTC AGATCGATCA GTTGGGCCTG CGGATTCTGT CGCTCGCGTG TCAGCAGCGC
GCGGCCTGGC GCGATGTCTT GCCGGACGAT TTCGTGGTCG CCGTGAATCT CTCACCTCGG
CAGTTGCTGG ACTGCAGGCT GTACCGGAAC GTGCTCGACA TCCTGCATCG CGAAGGGTTG
TCGCCCACGC AGCTCGAACT GGAGATCACT GAATCGACGA TGCTGCTGCC GGACATCACC
GCCATCGGCA ACCTGAAGCA GCTGCGCGAG GCCGGCGTGA AAGTCGCGCT CGACGATTTC
GGGATGGGCC ATACGTCGCT GCACTACCTG CGCGAGCTGC CGCTGGATAC CGTGAAGATC
GACCGCTCGC TGGCAGATGT GAGCGCGGGC AGCGTCAACG AACACATTGT GCGCAGTATT
GCCAGCCTGA GCCGCACGCT GAACCTGTCG ACGGTGGTGG AAGGCGTCGA GACGGAGCAG
CAGCTTGAGC GCCTGTCGGC CTTGGGCTGT GAACGGTTTC AGGGGTATTT CTTCAGCCGC
CCGCTGGCGC CGAGCGTGTG TCAGCAGTTT GTGCTGGATG CCAACCTGCG GCCGTTGGTG
CACGCGCTTT GA
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| Protein sequence | MTTQALSPWL RLLSAAERFD RGPYFIAIRR GLALSLPLIM VGAVALLLRN PPTAGMRHLL
LEAFGTRLDA FCDSVLAGTI GIGSLVALFG FADVLAQLHN QRAGHRVVNP TVAAVVVVSC
FFTLIAPAAN ASLMAWLSLG QGLFGALVVA SLGGSLFLKL CSIRRLRIPS HHLSNDLLVG
DVLSVVPAGM LTILTFALLK AGMAWAGWLH FMAIVDPLLA WPYSAVSNSL LFGLGYETAA
QVLWLFGIHG PNALYTVHQH ILEPAAQANA AAVASGGQPP FIFTYHFFAV FARMGGSGGT
LSLILALLIS RRMQRGRKMA LVVMLPALFN VNEPLLFGLP LVLNPVYAIP FLLTPVVQIL
IAYAATVADL MPKTSYPVAW TTPALFSGYA ATGSVWGAVV QLIGLVVGAA IYLPFVRMAD
VLSARRSQDV LASLLQIAES AEVSLKGRRC LDLPGDEGRM AVALASDLED AIKREGQIFL
EFQPQVDCST GRVFGAEALL RWQHPVLGRV ASPIVVALAD DIGQIDQLGL RILSLACQQR
AAWRDVLPDD FVVAVNLSPR QLLDCRLYRN VLDILHREGL SPTQLELEIT ESTMLLPDIT
AIGNLKQLRE AGVKVALDDF GMGHTSLHYL RELPLDTVKI DRSLADVSAG SVNEHIVRSI
ASLSRTLNLS TVVEGVETEQ QLERLSALGC ERFQGYFFSR PLAPSVCQQF VLDANLRPLV
HAL
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