Gene Rpic_3865 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_3865 
Symbol 
ID6284968 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010678 
Strand
Start bp118482 
End bp119051 
Gene Length570 bp 
Protein Length189 aa 
Translation table11 
GC content61% 
IMG OID642618365 
Productisochorismatase hydrolase 
Protein accessionYP_001892406 
Protein GI187926061 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1335] Amidases related to nicotinamidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.368607 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.282134 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGACAT TCGCGCTTGT TCCCAAGCAA ACGGCGTTGT TGGTCATGCA CTACCAGACC 
GACATCATGG CGTTGTTCCC GTCGGTCGCG CCTGCGCTGC TCGCCAACAC CCGCAAGCTG
TGCGACGCGG CGCGGGCCAC GGGCATCAGC GTCTATTTTG CGAAGTTCCA CTTCAGCCCC
GGCTATCCGG AAATTAGCCC GTTGAACAAG AACGGGCAAG GCGTGAAGCA ACTGGGCCTG
TTCGTTGAAG ACCGCATCTC GCCGGAACTC GGCCGGCAGC CGGATGAGTC GATCATCATC
GCGCACCGCG CCAGCGTCTT CTACGGAACC GATCTGCAGG TGCGGCTCTC CGCCCGTGGC
ATCGATACCT TGATCATGGT GGGGGTTGCG TCAACGGGCG TGATGCTGTC TTCCATTGCG
CATGCAAGCG ATGCGGACTA CCGCCTGTTC ACCGTGAAGG ACTGCTGCTA CGACCCGGAC
CCGATCGTGC ACGAGCACCT TTTTGCGACG GCGTTTGAAT CGCGCACGAC GGTGCTGTCG
CTGGCGGATG CGCTATCGAT GCTGGGTTGA
 
Protein sequence
MSTFALVPKQ TALLVMHYQT DIMALFPSVA PALLANTRKL CDAARATGIS VYFAKFHFSP 
GYPEISPLNK NGQGVKQLGL FVEDRISPEL GRQPDESIII AHRASVFYGT DLQVRLSARG
IDTLIMVGVA STGVMLSSIA HASDADYRLF TVKDCCYDPD PIVHEHLFAT AFESRTTVLS
LADALSMLG