Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_3862 |
Symbol | |
ID | 6284965 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010678 |
Strand | + |
Start bp | 114117 |
End bp | 116063 |
Gene Length | 1947 bp |
Protein Length | 648 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 642618362 |
Product | proprionate catabolism activator, Fis family |
Protein accession | YP_001892403 |
Protein GI | 187926058 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | [TIGR02329] propionate catabolism operon regulatory protein PrpR |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.353505 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCCCA CTGCACCCGA CCTGACCGAC CGCCCCCGCA TCTGGGCTTG CGGCATCAGC CGCCTGAGCG ATCTCTTCCT CGATATTGCC GCCGAGTACA ACGACCGCGC CGAGCTGCGC GTCATCACAC GCGGCTTTGA AGACATCGTG CGCGAGATCG ACGCCGCTGG CGCCGAGCGG CCCGACGTGG TGGTGGCGGG CGGCTCCAAC GGCGCCTACC TGAAGCCGCG TCTGTCGCTG CCGGTGGTCG TCATCAACCC GACGGGCTTT GACGTGATGC ATGCGCTGGC CCGCGCCCGG CGCGACGCGG AATCGGTGGC GCTCGTCACC CACGGCGACA CGCCCGAGGA GGTGCGCCGC TTTGTCGCCG CCTATGGCAT GGACGTGGTG TTTGCCTCGT ACACCTCGCG CCAGGGCGCG GAGAGTTGCG TGCTGGACCT GCGCGACCGC GGCGTGGGTG TGGTGGTTGG CCCCGGTCTG GTGACGGACC TGGCAACGCA GGCGGGCATG AACGCCGTGT TCCTGTATTC GCGGGACTCT GTGCGTGCGG CATTCGATAC CGCGCTGGAA GTCGTACAGG CCACGCGCCG CGAAACCCTG CGCCGCCAGC GGTTGGACAA CCTGCTGCAG CATCTGCGTG ACGGTGTGGT CGCGCTGGAT GCGCAGGGTC GCGTGGAGGC CATCAACCAG CGGCTGGCCA CGGCGTTGGG CATCGAGGCC AAGCAGGCCA TCGGGCAACC GCTGCTCAGC ATTGCGCCCA ACCTGCTCGG CTTGCTGCCC GATACCGACG GCGACACGCT GGGCACCGTG CAGGGCGTGA ACTACGTCAT CCACCGTGGC CCGCTCACGA GCACCGGCAC CGGCGCCGCA GAAGGCACGG TGTTCACCTT CCAGGAATCC CGCGCGGTGG AGCGGCTGGA CCGCACGCTG CGCTCACGCC AGCGCCCGCA GCAGTTCAGC GCGCGCTATC GGCTCGAAGA CCTGGTGGGC GAATCGCTGG CGATGGAACG CGTGCGTACG CTGATACGCC GCTATGCCAA ATCCGACGCC ACCGTGCTCG TGCTGGGCGA ATCCGGCACG GGCAAGGAGA TGGTCGCGCA GGGGATGCAT CAGCTCAGCG CGCGGCGCGA TTTTCCATTC GTCGCCATCA ACTGCGGCGC GTTTCCCGAA GCGCTGCTGG AAAGCGAACT GTTCGGCTAC GAAGAGGGCG CCTTCACCGG CGCGCGCAAG GGCGGCAAGA CGGGGCTGAT TGAAGCCGCG CACCGCGGCA CACTGTTTCT CGATGAAATC GGCGAGATGC CGCTGCCGCT GCAAAGCCGC CTGCTGCGCG TATTGCAGGA GCGCGAGGTG GTGCGGCTGG GTTCCACCGA GCCCACCCGC GTCGATATTC GCGTGGTGGC CGCCACGCAT CGCGCGCTGA CGGACGCCGT GCAAGCCGGC ACCTTCCGCG CGGACCTGTA CTACCGCCTC AATATCCTCA GCATCGCGCT GCCCCCACTT CGCGAACGCC CCGACGACGT GATGCCCCTG GCCGTTGAAC TGCTCGTGCA GGCCGCGCGC CGCGATCCGC GCCTGCTGCT GCGCATTGCC GACACGGAAG AGGCTGCCCG CGTGCTGGCC GGTGTTGCCG AGCCGCTGAG GCGCTACGCC TGGGCCGGCA ATGTGCGCGA ACTGCAGAGC GTGGTCGAGC GGATTGCCGT TGAACTGGCT TACACCGAAG ACGCCAGCGC CATCACGCAA GACGTGCTGC GGCTGATTGC ACCCGAAGTG TTTGCCCACG CCACACCGGG CAAACCGGCG GTATTGACGC TGCGCGAGCG CAGCCGGGGC GTGGAAGCGG AAGAGATACG CGCAGCGCTG GCCGCCCACG GCGGCGATCG GGATGCCGTA TGTGCCGCGT TGGGGATCAG CAAGACGACG TTGTGGCGGC GGCTGCAGAT GGGCTAG
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Protein sequence | MSPTAPDLTD RPRIWACGIS RLSDLFLDIA AEYNDRAELR VITRGFEDIV REIDAAGAER PDVVVAGGSN GAYLKPRLSL PVVVINPTGF DVMHALARAR RDAESVALVT HGDTPEEVRR FVAAYGMDVV FASYTSRQGA ESCVLDLRDR GVGVVVGPGL VTDLATQAGM NAVFLYSRDS VRAAFDTALE VVQATRRETL RRQRLDNLLQ HLRDGVVALD AQGRVEAINQ RLATALGIEA KQAIGQPLLS IAPNLLGLLP DTDGDTLGTV QGVNYVIHRG PLTSTGTGAA EGTVFTFQES RAVERLDRTL RSRQRPQQFS ARYRLEDLVG ESLAMERVRT LIRRYAKSDA TVLVLGESGT GKEMVAQGMH QLSARRDFPF VAINCGAFPE ALLESELFGY EEGAFTGARK GGKTGLIEAA HRGTLFLDEI GEMPLPLQSR LLRVLQEREV VRLGSTEPTR VDIRVVAATH RALTDAVQAG TFRADLYYRL NILSIALPPL RERPDDVMPL AVELLVQAAR RDPRLLLRIA DTEEAARVLA GVAEPLRRYA WAGNVRELQS VVERIAVELA YTEDASAITQ DVLRLIAPEV FAHATPGKPA VLTLRERSRG VEAEEIRAAL AAHGGDRDAV CAALGISKTT LWRRLQMG
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