Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_3842 |
Symbol | |
ID | 6284938 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010678 |
Strand | + |
Start bp | 89396 |
End bp | 90217 |
Gene Length | 822 bp |
Protein Length | 273 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 642618342 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001892383 |
Protein GI | 187926038 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCTGG ATAAGAAGGT TGCCGTGGTG ACAGGGGCGG CTGGCGGTTT GGGGAAAGCC ATCGCATTGG CCTACGCCGA TGCGGGTGCC AAGCTCGTCG TTTGCGACAT CAACACGACT GCGCTGGAAG TGACCCGTGC CGAGATCGAA TCCCGCAACG CTGAATGCCT GGCCTTGCAT TGTGATGTGG GATCGAGCAG TGCCGTTGCA AACCTGTTTG AACAAGTCGA TGCGCACTTC GGAACAGTGC ACGTCCTCGT CAACAATGCG GCCGTGATTC CATCCCAGCC GGTTGACGAG CAGCGCCGCC TGCAGCATTA CGCCTACCTC ACAACGCCGC AACCGCGCCA CACGCTGGGC TTTACCAGCA GCATGACCGA CGATGATTGG CATCGCTTCT GGGATGTGAA CGTACATGGC GTTTTCTACT GCACGCGTGA GGCGCTCAAG CGGATGGAGC CGCAGGGCGA CGGCAAGGTC ATCAATATCG CGTCGATTGC GGGGCTGGCG GCGCTGAGCG CGCACAGCCC GCACTATTCA GCGACCAAGG GCGCCGTCGT GGCGTTCACG CGCTCGGTGG CAGCCGAGGT GGCTGGCGCC AATATCTTCG TCAACGCCAT CGCCCCGGGT GGTGTGCATA CCGACCATTT CGAAGCCTTG CTTCAGGGTA TCGGCGAAGA GAAGCGCAAC CAGCTCTTTC AACTCGTCCC GCTGGGCCGC CTGGGCACGC CCGAGGAATA CGCCTCGCTT GCCGTCTATC TGGCTGCGGA CGGGCATTAC ATCGCGGGTC AGATCATCAG CCCGAATGGC GGGATGTTCT AG
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Protein sequence | MKLDKKVAVV TGAAGGLGKA IALAYADAGA KLVVCDINTT ALEVTRAEIE SRNAECLALH CDVGSSSAVA NLFEQVDAHF GTVHVLVNNA AVIPSQPVDE QRRLQHYAYL TTPQPRHTLG FTSSMTDDDW HRFWDVNVHG VFYCTREALK RMEPQGDGKV INIASIAGLA ALSAHSPHYS ATKGAVVAFT RSVAAEVAGA NIFVNAIAPG GVHTDHFEAL LQGIGEEKRN QLFQLVPLGR LGTPEEYASL AVYLAADGHY IAGQIISPNG GMF
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