Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_3811 |
Symbol | |
ID | 6284902 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010678 |
Strand | + |
Start bp | 59300 |
End bp | 61927 |
Gene Length | 2628 bp |
Protein Length | 875 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642618312 |
Product | fimbrial biogenesis outer membrane usher protein |
Protein accession | YP_001892354 |
Protein GI | 187926009 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3188] P pilus assembly protein, porin PapC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.647139 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.153634 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACAGCCC CCCGATTCAC CAAGCTAGAA GCGAGCATTG CGATGTCTAC CTGCCAGACG ACCCAAGCGT TCTCCAGAAA GACCAATGGA AAAGCGGTTG CTGCGCGTCC GAGCGCAACG CCGCTGTATC TGGCCGTATG TCTGGCAATG ATGAACACCG CGCGCGCTGC CGAGGGGGAG ACGCTCGTCG CGCAGGTGGA TCCGACGCTG CTTGCGTACA ACACGAGTTT CCTGCAAGGT CAAGGGCGTC CGGCTGATCT GAGCGCTGTG CTCAGTTCTG GCAGCAGCGT GCCGCCAGGT ACGTATCGGG TCGAGGTGCA GGTCAACGGT AATCTGGTCG GCCGCCGCGA CATCGACTTC TATCAGGACA GCGACAAAGC CAAGCTGCGC CCGTGCCTGA CGGCCAAGAT GCTGCAGGAC TTTGGCGTCA GCCTGAGCTC CATTACGCCG CCGCTGGACA TCAACAGCCA CGCCTGCCTG GATTTGCCGC ACGTGCTGGA CCAGGCTTCC GCCGATTTCG ATGCGGGCCG GCTGCAGCTC AACCTCAGCA TTCCGCAGGC GTTCCTGTCC CGTGCTGCGC GCGGGTATGT CGACCCTGCG TTGTGGGACG AGGGTGTCAC CGCCGGCTAC GTCAACTACC AGTTCAGCGG CAACTACGGC CACAGCGGCA CCGGCAACGA CAGCAGCAGC TACTTCATCG GCTTGCAGAA CGGCGTGAAT ATTGGTCGTT GGCGGTTGCG AAACGAGTCC ACGGTCAGCG GCAGCAACAG CGGCCAGACC CGCTTCAAGA GCAACCGCAC GCTCGTGCAG CGCGACGTCG ATGCCATCAA GGGCCAGCTG ACCCTTGGCG AACAGTATTC CGACGCCACG CTGTTCGACA GCGTGCGCTT TCGCGGTGTG CAAATCGGCT CCGACGACGC GATGCTGCCC GACAGCGAGC GCGGCTACGC TCCAGTCGTG CGTGGCCAGG CGGCCACCAA CGCAGTGGTT GAGGTGCGCC AGAGCGGTTA TGTGCTCTAT CGGGCCAACG TGCCGCCAGG TCCGTTCCAG CTGACTGACA TTTTCCCCTC CGGCTCCAAC GGCGATCTCG AGATCACCGT GATCGAAGCC GACGGCACCC GGCGCGTCAC GCATCAGGCG TTCTCCAGCC TGCCGCTGAT GCTGCGCAAG GGCCGCCTGA AGTACAACTT TGCGGCGGGC AAGTACGACG GCGACCAAGG TCCGTCGCCC AATCTGCTCA GCGGCTCGCT CGTCTACGGT CTGACCGACA ACAGCACGGT AGCTGGCGGC CTGCAGGTCT CGAAGGATTT CCAGGCGGTG AACGTGGGCG TTGGTACCAA CACGCCCATC GGCGCGCTCT CCGTTGACCT GACCCAATCC AGCAGCCGTG TGCGCGGCGA GCGGGATACC GGGCAGAGTG TGCGGATCCT GTACGCCAAG ACGTTTACGA GCACCAACAC CAACTTCACG CTTGCTGCCT ATCGCTATTC GACGTCGGGT TATCGCACCT TCAACGACCA CGTCAACGAC CTGAGCAACA ACGCAGGCAA CGCGTGGTTC AACGCCACGG GCTTCCAGGC GGGTCGTAGC CGCTCACGCA TTGACCTGAC GACCAGCCAG GACCTCGGTG GCATAGAGCG CCAATACGGC AGTGTCTACC TGAACGTCAG CCAGCAGACT TTCTGGAACC AGCCGGGCTC GAGCCGCAGC ATCAGTCTCG GCTACGGCAA CAACTGGAAG CAGCTGAGTT ACAACCTCAG TCTGAGCCAG ACGAACGACA CGCGCTTCAG CGGGAGCGGC AACAGCACGC AAGTCATGCT GACAATGTCG ATTCCGCTTG GCAGCAAGCT GCACTCGCCG CGCGCCTATA CCAACATCAG CAATACCAAC AACGGCGGCA CCACTGTCCA GAGCGGGCTG AGCGGCTTCG TCAACGACAA CACGTCGTAT GCCATGCAGG CCGGTTACAC CGGCAGTGGA CGCGGCGCTA CCGGCGGGGC AAGCCTCACG CGCGATACCG ATATGGGCCA GCTCAACGCC AACGTGAACG TTGCGCGCGA CTATCAATCG GCCAGCGTGG GCGCCACGGG CTCGGTGGTA GTCCATCGTG GGGGCGTTAA CCTGGGCCGC ACCGTCGGCG ATACCTTCGC CTTGATGAAG GTGGAAGGAA TCAAGGGCGT GGACATGAAG ACCGATGCTG GCGTCTCGGT CGGCCGCAAC GGCTATGCGG TGATCACCTA TGCGCAGCCC TATCGACTGA ATGCGCTGAG CCCCGACACC CACAACCTTG GCGCGGACGT AGAACTGGAA GACACCGTCA AGCAGGTGGT GCCGCGCCGC GGCGCAATCG TCCAGGCGAC TTTCAAGGGC TACAGCGGAC AGCGCGCCCA GTTTGCGTTC CAGCAGCCCG ATGGCAAGCC GGTGCCATTC GGCGCCAGCG TGGAAGAAGC GCCAACGGGC AGACACCTCG GCATTACGGA TCCGAACGGC AACGCGTTCG TGCTGCTCCG GCAGGAGCAG GGCACCTTGA CGGTGAAGTG GAAAGACAAC CAGTGTCAGG CGCCGTATGC GTTGGGTCAG GCTGAACCCG GACGGAACTA CCGGAAGCAG ACGCTGCGCT GTCGTTGA
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Protein sequence | MTAPRFTKLE ASIAMSTCQT TQAFSRKTNG KAVAARPSAT PLYLAVCLAM MNTARAAEGE TLVAQVDPTL LAYNTSFLQG QGRPADLSAV LSSGSSVPPG TYRVEVQVNG NLVGRRDIDF YQDSDKAKLR PCLTAKMLQD FGVSLSSITP PLDINSHACL DLPHVLDQAS ADFDAGRLQL NLSIPQAFLS RAARGYVDPA LWDEGVTAGY VNYQFSGNYG HSGTGNDSSS YFIGLQNGVN IGRWRLRNES TVSGSNSGQT RFKSNRTLVQ RDVDAIKGQL TLGEQYSDAT LFDSVRFRGV QIGSDDAMLP DSERGYAPVV RGQAATNAVV EVRQSGYVLY RANVPPGPFQ LTDIFPSGSN GDLEITVIEA DGTRRVTHQA FSSLPLMLRK GRLKYNFAAG KYDGDQGPSP NLLSGSLVYG LTDNSTVAGG LQVSKDFQAV NVGVGTNTPI GALSVDLTQS SSRVRGERDT GQSVRILYAK TFTSTNTNFT LAAYRYSTSG YRTFNDHVND LSNNAGNAWF NATGFQAGRS RSRIDLTTSQ DLGGIERQYG SVYLNVSQQT FWNQPGSSRS ISLGYGNNWK QLSYNLSLSQ TNDTRFSGSG NSTQVMLTMS IPLGSKLHSP RAYTNISNTN NGGTTVQSGL SGFVNDNTSY AMQAGYTGSG RGATGGASLT RDTDMGQLNA NVNVARDYQS ASVGATGSVV VHRGGVNLGR TVGDTFALMK VEGIKGVDMK TDAGVSVGRN GYAVITYAQP YRLNALSPDT HNLGADVELE DTVKQVVPRR GAIVQATFKG YSGQRAQFAF QQPDGKPVPF GASVEEAPTG RHLGITDPNG NAFVLLRQEQ GTLTVKWKDN QCQAPYALGQ AEPGRNYRKQ TLRCR
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