Gene Rpic_3811 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_3811 
Symbol 
ID6284902 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010678 
Strand
Start bp59300 
End bp61927 
Gene Length2628 bp 
Protein Length875 aa 
Translation table11 
GC content63% 
IMG OID642618312 
Productfimbrial biogenesis outer membrane usher protein 
Protein accessionYP_001892354 
Protein GI187926009 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3188] P pilus assembly protein, porin PapC 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.647139 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.153634 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACAGCCC CCCGATTCAC CAAGCTAGAA GCGAGCATTG CGATGTCTAC CTGCCAGACG 
ACCCAAGCGT TCTCCAGAAA GACCAATGGA AAAGCGGTTG CTGCGCGTCC GAGCGCAACG
CCGCTGTATC TGGCCGTATG TCTGGCAATG ATGAACACCG CGCGCGCTGC CGAGGGGGAG
ACGCTCGTCG CGCAGGTGGA TCCGACGCTG CTTGCGTACA ACACGAGTTT CCTGCAAGGT
CAAGGGCGTC CGGCTGATCT GAGCGCTGTG CTCAGTTCTG GCAGCAGCGT GCCGCCAGGT
ACGTATCGGG TCGAGGTGCA GGTCAACGGT AATCTGGTCG GCCGCCGCGA CATCGACTTC
TATCAGGACA GCGACAAAGC CAAGCTGCGC CCGTGCCTGA CGGCCAAGAT GCTGCAGGAC
TTTGGCGTCA GCCTGAGCTC CATTACGCCG CCGCTGGACA TCAACAGCCA CGCCTGCCTG
GATTTGCCGC ACGTGCTGGA CCAGGCTTCC GCCGATTTCG ATGCGGGCCG GCTGCAGCTC
AACCTCAGCA TTCCGCAGGC GTTCCTGTCC CGTGCTGCGC GCGGGTATGT CGACCCTGCG
TTGTGGGACG AGGGTGTCAC CGCCGGCTAC GTCAACTACC AGTTCAGCGG CAACTACGGC
CACAGCGGCA CCGGCAACGA CAGCAGCAGC TACTTCATCG GCTTGCAGAA CGGCGTGAAT
ATTGGTCGTT GGCGGTTGCG AAACGAGTCC ACGGTCAGCG GCAGCAACAG CGGCCAGACC
CGCTTCAAGA GCAACCGCAC GCTCGTGCAG CGCGACGTCG ATGCCATCAA GGGCCAGCTG
ACCCTTGGCG AACAGTATTC CGACGCCACG CTGTTCGACA GCGTGCGCTT TCGCGGTGTG
CAAATCGGCT CCGACGACGC GATGCTGCCC GACAGCGAGC GCGGCTACGC TCCAGTCGTG
CGTGGCCAGG CGGCCACCAA CGCAGTGGTT GAGGTGCGCC AGAGCGGTTA TGTGCTCTAT
CGGGCCAACG TGCCGCCAGG TCCGTTCCAG CTGACTGACA TTTTCCCCTC CGGCTCCAAC
GGCGATCTCG AGATCACCGT GATCGAAGCC GACGGCACCC GGCGCGTCAC GCATCAGGCG
TTCTCCAGCC TGCCGCTGAT GCTGCGCAAG GGCCGCCTGA AGTACAACTT TGCGGCGGGC
AAGTACGACG GCGACCAAGG TCCGTCGCCC AATCTGCTCA GCGGCTCGCT CGTCTACGGT
CTGACCGACA ACAGCACGGT AGCTGGCGGC CTGCAGGTCT CGAAGGATTT CCAGGCGGTG
AACGTGGGCG TTGGTACCAA CACGCCCATC GGCGCGCTCT CCGTTGACCT GACCCAATCC
AGCAGCCGTG TGCGCGGCGA GCGGGATACC GGGCAGAGTG TGCGGATCCT GTACGCCAAG
ACGTTTACGA GCACCAACAC CAACTTCACG CTTGCTGCCT ATCGCTATTC GACGTCGGGT
TATCGCACCT TCAACGACCA CGTCAACGAC CTGAGCAACA ACGCAGGCAA CGCGTGGTTC
AACGCCACGG GCTTCCAGGC GGGTCGTAGC CGCTCACGCA TTGACCTGAC GACCAGCCAG
GACCTCGGTG GCATAGAGCG CCAATACGGC AGTGTCTACC TGAACGTCAG CCAGCAGACT
TTCTGGAACC AGCCGGGCTC GAGCCGCAGC ATCAGTCTCG GCTACGGCAA CAACTGGAAG
CAGCTGAGTT ACAACCTCAG TCTGAGCCAG ACGAACGACA CGCGCTTCAG CGGGAGCGGC
AACAGCACGC AAGTCATGCT GACAATGTCG ATTCCGCTTG GCAGCAAGCT GCACTCGCCG
CGCGCCTATA CCAACATCAG CAATACCAAC AACGGCGGCA CCACTGTCCA GAGCGGGCTG
AGCGGCTTCG TCAACGACAA CACGTCGTAT GCCATGCAGG CCGGTTACAC CGGCAGTGGA
CGCGGCGCTA CCGGCGGGGC AAGCCTCACG CGCGATACCG ATATGGGCCA GCTCAACGCC
AACGTGAACG TTGCGCGCGA CTATCAATCG GCCAGCGTGG GCGCCACGGG CTCGGTGGTA
GTCCATCGTG GGGGCGTTAA CCTGGGCCGC ACCGTCGGCG ATACCTTCGC CTTGATGAAG
GTGGAAGGAA TCAAGGGCGT GGACATGAAG ACCGATGCTG GCGTCTCGGT CGGCCGCAAC
GGCTATGCGG TGATCACCTA TGCGCAGCCC TATCGACTGA ATGCGCTGAG CCCCGACACC
CACAACCTTG GCGCGGACGT AGAACTGGAA GACACCGTCA AGCAGGTGGT GCCGCGCCGC
GGCGCAATCG TCCAGGCGAC TTTCAAGGGC TACAGCGGAC AGCGCGCCCA GTTTGCGTTC
CAGCAGCCCG ATGGCAAGCC GGTGCCATTC GGCGCCAGCG TGGAAGAAGC GCCAACGGGC
AGACACCTCG GCATTACGGA TCCGAACGGC AACGCGTTCG TGCTGCTCCG GCAGGAGCAG
GGCACCTTGA CGGTGAAGTG GAAAGACAAC CAGTGTCAGG CGCCGTATGC GTTGGGTCAG
GCTGAACCCG GACGGAACTA CCGGAAGCAG ACGCTGCGCT GTCGTTGA
 
Protein sequence
MTAPRFTKLE ASIAMSTCQT TQAFSRKTNG KAVAARPSAT PLYLAVCLAM MNTARAAEGE 
TLVAQVDPTL LAYNTSFLQG QGRPADLSAV LSSGSSVPPG TYRVEVQVNG NLVGRRDIDF
YQDSDKAKLR PCLTAKMLQD FGVSLSSITP PLDINSHACL DLPHVLDQAS ADFDAGRLQL
NLSIPQAFLS RAARGYVDPA LWDEGVTAGY VNYQFSGNYG HSGTGNDSSS YFIGLQNGVN
IGRWRLRNES TVSGSNSGQT RFKSNRTLVQ RDVDAIKGQL TLGEQYSDAT LFDSVRFRGV
QIGSDDAMLP DSERGYAPVV RGQAATNAVV EVRQSGYVLY RANVPPGPFQ LTDIFPSGSN
GDLEITVIEA DGTRRVTHQA FSSLPLMLRK GRLKYNFAAG KYDGDQGPSP NLLSGSLVYG
LTDNSTVAGG LQVSKDFQAV NVGVGTNTPI GALSVDLTQS SSRVRGERDT GQSVRILYAK
TFTSTNTNFT LAAYRYSTSG YRTFNDHVND LSNNAGNAWF NATGFQAGRS RSRIDLTTSQ
DLGGIERQYG SVYLNVSQQT FWNQPGSSRS ISLGYGNNWK QLSYNLSLSQ TNDTRFSGSG
NSTQVMLTMS IPLGSKLHSP RAYTNISNTN NGGTTVQSGL SGFVNDNTSY AMQAGYTGSG
RGATGGASLT RDTDMGQLNA NVNVARDYQS ASVGATGSVV VHRGGVNLGR TVGDTFALMK
VEGIKGVDMK TDAGVSVGRN GYAVITYAQP YRLNALSPDT HNLGADVELE DTVKQVVPRR
GAIVQATFKG YSGQRAQFAF QQPDGKPVPF GASVEEAPTG RHLGITDPNG NAFVLLRQEQ
GTLTVKWKDN QCQAPYALGQ AEPGRNYRKQ TLRCR