Gene Rpic_3809 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_3809 
Symbol 
ID6284900 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010678 
Strand
Start bp57801 
End bp58388 
Gene Length588 bp 
Protein Length195 aa 
Translation table11 
GC content63% 
IMG OID642618310 
ProductFimbrial protein 
Protein accessionYP_001892352 
Protein GI187926007 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3539] P pilus assembly protein, pilin FimA 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00136767 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.0813635 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGCAA AACTGTTCCT GGCTGGCGTC GCCATGTCTA CGCTGTCGGC CGCCGCAATG 
GCCCAAACGA CGCCTACGTC GGTGGATGGT GTCATCAATT TCCAAGGCAC GATCCTGAGC
GACACCTGCA AGGTCTCCTC GCTGACCGGC GACGCAGGCA CGATCAACGT CGACATGGGC
ACCATTGCTG CCGATGACAT CGGTACGCTG ACCGCACCGA AGAGCCTCGC CAACGGCGCT
GGCTCGGCCA ACATTGACGT GGTCTGCAAG ACGGGTGCCA AGGTCAGCAT GAAGTTCGCC
GGCAAGACGG CTGAGCTGAG CGCAGACAAG AAGACGCTGC GCGTGAACAA CGGCAACACC
GGCGCAGGCT TCGCACAAGG CGTGAGCATT GCCGTGTACG AAGGTACGGG CGCTGGCGCT
AACGCGTTCG ACCTCAGCGG CGGCAACCTG CTGGCGCAAA CCACGGTGCC GTCGACCGGT
GGCGCAGTCA ACGTGCGCTT TGCCGCAGCC TATGTGGCCG CAGACCCGAC CAAGATCAAG
CCGGGTATCG CCAACGCCAG CCTGCCGTTC ACGCTCACCT ACGAGTAA
 
Protein sequence
MKAKLFLAGV AMSTLSAAAM AQTTPTSVDG VINFQGTILS DTCKVSSLTG DAGTINVDMG 
TIAADDIGTL TAPKSLANGA GSANIDVVCK TGAKVSMKFA GKTAELSADK KTLRVNNGNT
GAGFAQGVSI AVYEGTGAGA NAFDLSGGNL LAQTTVPSTG GAVNVRFAAA YVAADPTKIK
PGIANASLPF TLTYE