| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3787 |
|---|
| Symbol | |
|---|
| ID | 6284873 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010678 |
|---|
| Strand | + |
|---|
| Start bp | 29300 |
|---|
| End bp | 30646 |
|---|
| Gene Length | 1347 bp |
|---|
| Protein Length | 448 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642618288 |
|---|
| Product | General substrate transporter |
|---|
| Protein accession | YP_001892330 |
|---|
| Protein GI | 187925985 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00883] metabolite-proton symporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.536994 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.195761 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACAGC CCCAAGCTGG CACGATGCCG GGCGAATTCT CGCCCGCCCA AGCCCCCGCC
AGAGACAGAG ACACTCCGCA AGACGTTCGT CGTCGTCTGC GTTCCATCTT CTCGGGCTCG
ATCGGCAACC TCGTCGAGTG GTACGACTGG TACGTGTATT CGGCGTTTGC GCTGTATTTC
GCCAAGTCGT TTTTCCCGAA GGGCGATCAG ACCGCGCAGT TGCTCAACAC AGCCGCGGTG
TTTGCCGTCG GTTTCCTGGC GCGGCCGGTG GGCGGCTGGT TGATGGGCAT TTATGCCGAT
CGCTATGGCC GCAAGCGCGC GCTGTTCTTC TCCGTGGTGC TGATGTGCCT GGGCTCGCTG
ATCATTGCCC TGACGCCCAG CTATGCGGCC ATCGGCGTCG CGGCGCCGGT GCTGCTGGTG
CTGGCGCGCC TGCTGCAGGG GTTGTCGGTC GGCGGGGAGT ACGGCACATC GGCCACGTAC
CTCAGCGAGG TCGCCAACAA GGAACATCGC GGCTTCTATT CCAGCTTCCA ATACGTCACG
CTCATCGCCG GCCAGCTGAC GGCGCTGGCG CTGCTGATCG TGCTGCAGCA GTTCGTGCTG
TCACCGGCGC AGCTGGACGC ATGGGGCTGG CGCATTCCAT TCTTCGTTGG TGCACTGTGC
GCGCTGGTGG CGATGCGCAT GCGTTCGCAC ATGGAGGAAA CGCAGTCATT CACGGCTGCG
AAAGAGAATA AGAAACGCGG CACGCTGGCC GAACTCGCCA AGCATCCGCG CGCGGTGGCC
ATCGTCGTGG GCCTGACGCT GGGCGGGACG GTTGCGTTCT ACACGTACTC GATCTACATG
CAGAAGTTCC TGGCGAACAC GGTGGGCCTG TCGAAGAGCC AGGCAACGCT GGTGTCAGGC
GCGACGCTGC TGCTCTTCGC GCTCCTGCAG CCCATCGTGG GCGGGTTGTC CGACCGTATC
GGCCGTCGCC CGATCCTGAT CGCGTTCGGC GTGCTGGGTA CGCTCTTGAC GGTGCCTATC
ATGACCGGCA TCAGTCACAC GACGAACCCG TGGTCAGCCT TTTTCCTCAT CATGGCCGCG
CTGGTGATCG TTTCCGGCTA CACGTCGATC AACGCGGTGG TGAAGGCCGA ACTGTTCCCG
GCAGAGGTGC GTGCGCTGGG CGTGGGGCTG CCGTATGCGC TCACGGTGTC GATCTTCGGC
GGCACGGCGG AGTACATCGC ACTGTGGCTC AAGCAGGCGG GCCACGAGTC GCTGTTCTAC
TGGTATGTGA CGGGCACCAT CTTCCTGTCG CTGTTGGTCT ACGTGTTCAT GCGCGATACT
CGCGAGCATT CCCGTATCGA ACACTGA
|
|---|
| Protein sequence | MTQPQAGTMP GEFSPAQAPA RDRDTPQDVR RRLRSIFSGS IGNLVEWYDW YVYSAFALYF
AKSFFPKGDQ TAQLLNTAAV FAVGFLARPV GGWLMGIYAD RYGRKRALFF SVVLMCLGSL
IIALTPSYAA IGVAAPVLLV LARLLQGLSV GGEYGTSATY LSEVANKEHR GFYSSFQYVT
LIAGQLTALA LLIVLQQFVL SPAQLDAWGW RIPFFVGALC ALVAMRMRSH MEETQSFTAA
KENKKRGTLA ELAKHPRAVA IVVGLTLGGT VAFYTYSIYM QKFLANTVGL SKSQATLVSG
ATLLLFALLQ PIVGGLSDRI GRRPILIAFG VLGTLLTVPI MTGISHTTNP WSAFFLIMAA
LVIVSGYTSI NAVVKAELFP AEVRALGVGL PYALTVSIFG GTAEYIALWL KQAGHESLFY
WYVTGTIFLS LLVYVFMRDT REHSRIEH
|
|---|
| |